Scientific Task Atlas

What scientific problem does each benchmark actually test?

Separate protein folding from sequence design, PPI from protein-ligand binding, and DNA, RNA, small-molecule, cellular, omics, and workflow tasks. Counts keep their original units and evidence.

81 task terms · Parent rows roll up their leaf tasks · Download coverage CSV

Scientific task	Object / family	Coverage	Tracks	Official works
Protein structure prediction 蛋白质结构预测	Protein Structure prediction	5 families	2	6
Protein monomer structure prediction 蛋白质单体折叠与结构预测 Child of Protein structure prediction	Protein Structure prediction	1 families	1	1
Protein complex structure prediction 蛋白质复合物结构预测 Child of Protein structure prediction	Protein Structure prediction	2 families	1	2
Protein model quality assessment 蛋白质模型质量评估 Child of Protein structure prediction	Protein Structure prediction	3 families	1	3
Protein secondary-structure prediction 蛋白质二级结构预测 Child of Protein structure prediction	Protein Structure prediction	1 families	0	1
Protein contact-map prediction 蛋白质接触图预测 Child of Protein structure prediction	Protein Structure prediction	1 families	0	1
Protein design 蛋白质设计	Protein Design and generation	4 families	0	2
Protein sequence design 蛋白质序列设计 Child of Protein design	Protein Design and generation	3 families	0	1
Protein fitness optimization 蛋白质适应度优化 Child of Protein design	Protein Design and generation	Coverage gap	0	0
Protein property and function prediction 蛋白质性质与功能预测	Protein Property and function prediction	6 families	14	7
Protein function annotation 蛋白质功能注释 Child of Protein property and function prediction	Protein Property and function prediction	1 families	1	1
Protein remote-homology detection 蛋白质远缘同源检测 Child of Protein property and function prediction	Protein Property and function prediction	1 families	0	1
Protein residue-identity prediction 蛋白质残基身份预测 Child of Protein property and function prediction	Protein Property and function prediction	1 families	0	1
Protein fluorescence prediction 蛋白质荧光性质预测 Child of Protein property and function prediction	Protein Property and function prediction	2 families	1	2
Protein mutation-effect prediction 蛋白质突变效应预测 Child of Protein property and function prediction	Protein Variant and perturbation effect	2 families	2	2
Protein fitness prediction 蛋白质适应度预测 Child of Protein property and function prediction	Protein Property and function prediction	2 families	4	3
Protein stability prediction 蛋白质稳定性预测 Child of Protein property and function prediction	Protein Property and function prediction	3 families	3	3
Protein solubility prediction 蛋白质溶解性预测 Child of Protein property and function prediction	Protein Property and function prediction	1 families	1	1
Protein clinical variant interpretation 蛋白质临床变异解读 Child of Protein property and function prediction	Protein Variant and perturbation effect	2 families	4	2
Molecular interaction and binding 分子相互作用与结合	Protein, RNA, Small molecule Molecular interaction	8 families	5	9
Protein-protein interaction prediction 蛋白质-蛋白质相互作用预测 Child of Molecular interaction and binding	Protein Molecular interaction	1 families	1	1
Protein-protein interface prediction 蛋白质-蛋白质界面预测 Child of Molecular interaction and binding	Protein Molecular interaction	1 families	0	1
Protein-complex mutation stability prediction 蛋白质复合物突变稳定性预测 Child of Molecular interaction and binding	Protein Variant and perturbation effect	1 families	0	1
Protein-protein binding affinity 蛋白质-蛋白质结合亲和力 Child of Molecular interaction and binding	Protein Molecular interaction	Coverage gap	0	0
Antibody-antigen interaction 抗体-抗原相互作用 Child of Molecular interaction and binding	Protein Molecular interaction	2 families	2	1
Protein-ligand binding prediction 蛋白质-配体结合预测 Child of Molecular interaction and binding	Protein, Small molecule Molecular interaction	1 families	0	1
Protein-ligand functional efficacy prediction 蛋白质-配体功能效应预测 Child of Molecular interaction and binding	Protein, Small molecule Property and function prediction	1 families	0	1
Protein-ligand pose prediction 蛋白质-配体结合构象预测 Child of Molecular interaction and binding	Protein, Small molecule Molecular interaction	2 families	1	2
Protein-ligand binding affinity 蛋白质-配体结合亲和力 Child of Molecular interaction and binding	Protein, Small molecule Molecular interaction	3 families	1	4
RNA-protein interaction prediction RNA-蛋白质相互作用预测 Child of Molecular interaction and binding	RNA, Protein Molecular interaction	1 families	1	1
DNA regulation and perturbation DNA调控与扰动	DNA Sequence and regulation	4 families	21	5
Promoter detection 启动子识别 Child of DNA regulation and perturbation	DNA Sequence and regulation	2 families	2	2
Enhancer activity prediction 增强子活性预测 Child of DNA regulation and perturbation	DNA Sequence and regulation	2 families	1	2
Transcription-factor binding-site prediction 转录因子结合位点预测 Child of DNA regulation and perturbation	DNA, Protein Molecular interaction	2 families	3	2
Enhancer-promoter interaction prediction 增强子-启动子相互作用预测 Child of DNA regulation and perturbation	DNA Molecular interaction	1 families	1	1
Epigenetic-mark prediction 表观遗传标记预测 Child of DNA regulation and perturbation	DNA Sequence and regulation	2 families	1	2
DNA variant-effect prediction DNA变异效应预测 Child of DNA regulation and perturbation	DNA Variant and perturbation effect	Coverage gap	0	0
DNA sequence analysis DNA序列分析 Child of DNA regulation and perturbation	DNA Sequence and regulation	2 families	5	2
CRISPR guide activity prediction CRISPR向导活性预测 Child of DNA regulation and perturbation	DNA, RNA Variant and perturbation effect	2 families	1	2
CRISPR off-target prediction CRISPR脱靶预测 Child of DNA regulation and perturbation	DNA, RNA Variant and perturbation effect	1 families	0	1
DNA sequence design DNA序列设计 Child of DNA regulation and perturbation	DNA Design and generation	1 families	7	2
RNA function and design RNA功能与设计	RNA Sequence and regulation	4 families	11	5
RNA structure prediction RNA结构预测 Child of RNA function and design	RNA Structure prediction	1 families	0	1
RNA structure quality assessment RNA结构质量评估 Child of RNA function and design	RNA Structure prediction	1 families	0	1
RNA function classification RNA功能分类 Child of RNA function and design	RNA Property and function prediction	2 families	1	2
RNA modification prediction RNA修饰预测 Child of RNA function and design	RNA Sequence and regulation	2 families	1	2
RNA processing and translation prediction RNA加工与翻译预测 Child of RNA function and design	RNA Sequence and regulation	3 families	7	4
RNA stability and degradation prediction RNA稳定性与降解预测 Child of RNA function and design	RNA Property and function prediction	1 families	0	1
Programmable RNA-switch activity prediction 可编程RNA开关活性预测 Child of RNA function and design	RNA Property and function prediction	1 families	0	1
RNA design RNA设计 Child of RNA function and design	RNA Design and generation	1 families	1	1
siRNA efficacy prediction siRNA效能预测 Child of RNA function and design	RNA Variant and perturbation effect	1 families	1	1
Small-molecule discovery 小分子发现	Small molecule Design and generation	3 families	0	4
Small-molecule generation 小分子生成 Child of Small-molecule discovery	Small molecule Design and generation	1 families	0	1
Small-molecule property prediction 小分子性质预测 Child of Small-molecule discovery	Small molecule Property and function prediction	2 families	0	3
ADMET and toxicity prediction ADMET与毒性预测 Child of Small-molecule discovery	Small molecule Property and function prediction	1 families	0	2
Chemical reaction prediction 化学反应预测 Child of Small-molecule discovery	Small molecule Property and function prediction	Coverage gap	0	0
Retrosynthesis planning 逆合成规划 Child of Small-molecule discovery	Small molecule Design and generation	Coverage gap	0	0
Omics and cellular analysis 组学与细胞分析	Omics profile, Cell, Tissue Omics analysis	7 families	0	11
Differential expression analysis 差异表达分析 Child of Omics and cellular analysis	Omics profile Omics analysis	1 families	0	3
Differential abundance analysis 差异丰度分析 Child of Omics and cellular analysis	Omics profile, Microbial community Omics analysis	Coverage gap	0	0
Cell-type annotation 细胞类型注释 Child of Omics and cellular analysis	Cell, Omics profile Cellular and spatial analysis	2 families	0	4
Cell-state clustering 细胞状态聚类 Child of Omics and cellular analysis	Cell, Omics profile Cellular and spatial analysis	1 families	0	3
Single-cell data integration 单细胞数据整合 Child of Omics and cellular analysis	Cell, Omics profile Cellular and spatial analysis	1 families	0	1
Trajectory inference 轨迹推断 Child of Omics and cellular analysis	Cell, Omics profile Cellular and spatial analysis	Coverage gap	0	0
Gene-regulatory-network inference 基因调控网络推断 Child of Omics and cellular analysis	DNA, RNA, Omics profile Omics analysis	Coverage gap	0	0
Pathway enrichment analysis 通路富集分析 Child of Omics and cellular analysis	Omics profile Omics analysis	Coverage gap	0	0
Spatial omics analysis 空间组学分析 Child of Omics and cellular analysis	Cell, Tissue, Omics profile Cellular and spatial analysis	1 families	0	3
Multi-omics integration 多组学整合 Child of Omics and cellular analysis	Omics profile Omics analysis	Coverage gap	0	0
Biomarker discovery 生物标志物发现 Child of Omics and cellular analysis	Omics profile, Organism or population Omics analysis	Coverage gap	0	0
Microbial and metagenomic analysis 微生物与宏基因组分析 Child of Omics and cellular analysis	Microbial community, Omics profile Omics analysis	Coverage gap	0	0
Statistical and population genetics 统计与群体遗传分析	DNA, Organism or population Statistical genetics	Coverage gap	0	0
Genetic association and causal mapping 遗传关联与因果定位 Child of Statistical and population genetics	DNA, Organism or population Statistical genetics	Coverage gap	0	0
Heritability and polygenic prediction 遗传力与多基因预测 Child of Statistical and population genetics	DNA, Organism or population Statistical genetics	Coverage gap	0	0
Population genetics analysis 群体遗传分析 Child of Statistical and population genetics	DNA, Organism or population Statistical genetics	Coverage gap	0	0
Scientific workflow and systems analysis 科学工作流与系统分析	Experimental system, Omics profile Scientific workflow	7 families	21	12
Scientific database retrieval 科学数据库检索 Child of Scientific workflow and systems analysis	Experimental system Scientific workflow	1 families	11	1
Scientific evidence interpretation 科学证据解读 Child of Scientific workflow and systems analysis	Experimental system Scientific workflow	2 families	5	4
Experiment and protocol planning 实验与方案规划 Child of Scientific workflow and systems analysis	Experimental system Scientific workflow	1 families	2	3
End-to-end computational analysis 端到端计算分析 Child of Scientific workflow and systems analysis	Omics profile, Experimental system Scientific workflow	5 families	1	8
Reaction-network reconstruction 反应网络重建 Child of Scientific workflow and systems analysis	Experimental system Systems modeling	1 families	2	1
Simulation-based experiment 仿真实验 Child of Scientific workflow and systems analysis	Experimental system Systems modeling	1 families	2	1

Protein structure prediction

蛋白质结构预测

ProteinStructure prediction

Formal tracks2

Official works6

Protein monomer structure prediction

蛋白质单体折叠与结构预测

Child of Protein structure prediction

ProteinStructure prediction

Formal tracks1

Official works1

Protein complex structure prediction

蛋白质复合物结构预测

Child of Protein structure prediction

ProteinStructure prediction

Formal tracks1

Official works2

Protein model quality assessment

蛋白质模型质量评估

Child of Protein structure prediction

ProteinStructure prediction

Formal tracks1

Official works3

Protein secondary-structure prediction

蛋白质二级结构预测

Child of Protein structure prediction

ProteinStructure prediction

Formal tracks0

Official works1

Protein contact-map prediction

蛋白质接触图预测

Child of Protein structure prediction

ProteinStructure prediction

Formal tracks0

Official works1

Protein design

蛋白质设计

ProteinDesign and generation

Formal tracks0

Official works2

Protein sequence design

蛋白质序列设计

Child of Protein design

ProteinDesign and generation

Formal tracks0

Official works1

Protein fitness optimization

蛋白质适应度优化

Child of Protein design

ProteinDesign and generation

Formal tracks0

Official works0

Protein property and function prediction

蛋白质性质与功能预测

ProteinProperty and function prediction

Formal tracks14

Official works7

Protein function annotation

蛋白质功能注释

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks1

Official works1

Protein remote-homology detection

蛋白质远缘同源检测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks0

Official works1

Protein residue-identity prediction

蛋白质残基身份预测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks0

Official works1

Protein fluorescence prediction

蛋白质荧光性质预测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks1

Official works2

Protein mutation-effect prediction

蛋白质突变效应预测

Child of Protein property and function prediction

ProteinVariant and perturbation effect

Formal tracks2

Official works2

Protein fitness prediction

蛋白质适应度预测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks4

Official works3

Protein stability prediction

蛋白质稳定性预测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks3

Official works3

Protein solubility prediction

蛋白质溶解性预测

Child of Protein property and function prediction

ProteinProperty and function prediction

Formal tracks1

Official works1

Protein clinical variant interpretation

蛋白质临床变异解读

Child of Protein property and function prediction

ProteinVariant and perturbation effect

Formal tracks4

Official works2

Molecular interaction and binding

分子相互作用与结合

Protein, RNA, Small moleculeMolecular interaction

Formal tracks5

Official works9

Protein-protein interaction prediction

蛋白质-蛋白质相互作用预测

Child of Molecular interaction and binding

ProteinMolecular interaction

Formal tracks1

Official works1

Protein-protein interface prediction

蛋白质-蛋白质界面预测

Child of Molecular interaction and binding

ProteinMolecular interaction

Formal tracks0

Official works1

Protein-complex mutation stability prediction

蛋白质复合物突变稳定性预测

Child of Molecular interaction and binding

ProteinVariant and perturbation effect

Formal tracks0

Official works1

Protein-protein binding affinity

蛋白质-蛋白质结合亲和力

Child of Molecular interaction and binding

ProteinMolecular interaction

Formal tracks0

Official works0

Antibody-antigen interaction

抗体-抗原相互作用

Child of Molecular interaction and binding

ProteinMolecular interaction

Formal tracks2

Official works1

Protein-ligand binding prediction

蛋白质-配体结合预测

Child of Molecular interaction and binding

Protein, Small moleculeMolecular interaction

Formal tracks0

Official works1

Protein-ligand functional efficacy prediction

蛋白质-配体功能效应预测

Child of Molecular interaction and binding

Protein, Small moleculeProperty and function prediction

Formal tracks0

Official works1

Protein-ligand pose prediction

蛋白质-配体结合构象预测

Child of Molecular interaction and binding

Protein, Small moleculeMolecular interaction

Formal tracks1

Official works2

Protein-ligand binding affinity

蛋白质-配体结合亲和力

Child of Molecular interaction and binding

Protein, Small moleculeMolecular interaction

Formal tracks1

Official works4

RNA-protein interaction prediction

RNA-蛋白质相互作用预测

Child of Molecular interaction and binding

RNA, ProteinMolecular interaction

Formal tracks1

Official works1

DNA regulation and perturbation

DNA调控与扰动

DNASequence and regulation

Formal tracks21

Official works5

Promoter detection

启动子识别

Child of DNA regulation and perturbation

DNASequence and regulation

Formal tracks2

Official works2

Enhancer activity prediction

增强子活性预测

Child of DNA regulation and perturbation

DNASequence and regulation

Formal tracks1

Official works2

Transcription-factor binding-site prediction

转录因子结合位点预测

Child of DNA regulation and perturbation

DNA, ProteinMolecular interaction

Formal tracks3

Official works2

Enhancer-promoter interaction prediction

增强子-启动子相互作用预测

Child of DNA regulation and perturbation

DNAMolecular interaction

Formal tracks1

Official works1

Epigenetic-mark prediction

表观遗传标记预测

Child of DNA regulation and perturbation

DNASequence and regulation

Formal tracks1

Official works2

DNA variant-effect prediction

DNA变异效应预测

Child of DNA regulation and perturbation

DNAVariant and perturbation effect

Formal tracks0

Official works0

DNA sequence analysis

DNA序列分析

Child of DNA regulation and perturbation

DNASequence and regulation

Formal tracks5

Official works2

CRISPR guide activity prediction

CRISPR向导活性预测

Child of DNA regulation and perturbation

DNA, RNAVariant and perturbation effect

Formal tracks1

Official works2

CRISPR off-target prediction

CRISPR脱靶预测

Child of DNA regulation and perturbation

DNA, RNAVariant and perturbation effect

Formal tracks0

Official works1

DNA sequence design

DNA序列设计

Child of DNA regulation and perturbation

DNADesign and generation

Formal tracks7

Official works2

RNA function and design

RNA功能与设计

RNASequence and regulation

Formal tracks11

Official works5

RNA structure prediction

RNA结构预测

Child of RNA function and design

RNAStructure prediction

Formal tracks0

Official works1

RNA structure quality assessment

RNA结构质量评估

Child of RNA function and design

RNAStructure prediction

Formal tracks0

Official works1

RNA function classification

RNA功能分类

Child of RNA function and design

RNAProperty and function prediction

Formal tracks1

Official works2

RNA modification prediction

RNA修饰预测

Child of RNA function and design

RNASequence and regulation

Formal tracks1

Official works2

RNA processing and translation prediction

RNA加工与翻译预测

Child of RNA function and design

RNASequence and regulation

Formal tracks7

Official works4

RNA stability and degradation prediction

RNA稳定性与降解预测

Child of RNA function and design

RNAProperty and function prediction

Formal tracks0

Official works1

Programmable RNA-switch activity prediction

可编程RNA开关活性预测

Child of RNA function and design

RNAProperty and function prediction

Formal tracks0

Official works1

RNA design

RNA设计

Child of RNA function and design

RNADesign and generation

Formal tracks1

Official works1

siRNA efficacy prediction

siRNA效能预测

Child of RNA function and design

RNAVariant and perturbation effect

Formal tracks1

Official works1

Small-molecule discovery

小分子发现

Small moleculeDesign and generation

Formal tracks0

Official works4

Small-molecule generation

小分子生成

Child of Small-molecule discovery

Small moleculeDesign and generation

Formal tracks0

Official works1

Small-molecule property prediction

小分子性质预测

Child of Small-molecule discovery

Small moleculeProperty and function prediction

Formal tracks0

Official works3

ADMET and toxicity prediction

ADMET与毒性预测

Child of Small-molecule discovery

Small moleculeProperty and function prediction

Formal tracks0

Official works2

Chemical reaction prediction

化学反应预测

Child of Small-molecule discovery

Small moleculeProperty and function prediction

Formal tracks0

Official works0

Retrosynthesis planning

逆合成规划

Child of Small-molecule discovery

Small moleculeDesign and generation

Formal tracks0

Official works0

Omics and cellular analysis

组学与细胞分析

Omics profile, Cell, TissueOmics analysis

Formal tracks0

Official works11