Genomic Benchmarks
A versioned collection of nine DNA sequence-classification datasets covering regulatory elements, promoters, enhancers, open chromatin, species, and coding-context discrimination.
Scientific task · Sequence and regulation
DNA sequence analysis
Analyze DNA sequence properties
DNA序列分析
Nucleic-acid result atlas: T01 results (narrower_than_registry) · T03 results (narrower_than_registry) · T18 results (narrower_than_registry) · T19 results (narrower_than_registry) · T40 results (narrower_than_registry)
Definition and search aliases
- Permanent ID
dna-sequence-analysis- Aliases
- DNA sequence reasoning, restriction analysis, PCR sequence analysis
- Deprecated aliases
- None
- Hierarchy
- Leaf task under DNA regulation and perturbation
Coverage
2 benchmark families cover this task
LAB-Bench SeqQA — Primers-to-restriction enzymes
Infers restriction enzymes from a gene name and primer pair.
LAB-Bench SeqQA — Primers to amplicon length
Calculates expected amplicon length from a primer pair and DNA template.
LAB-Bench SeqQA — GC percentage
Calculates the rounded GC percentage of a DNA sequence.
LAB-Bench SeqQA — Restriction-fragment lengths
Calculates fragment lengths after restriction digestion of a DNA sequence.
LAB-Bench SeqQA — Restriction-fragment count
Calculates the number of fragments after restriction digestion of a DNA sequence.
Evidence-backed count claims
Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.
| Benchmark | Mapped task | Coverage | Count | Version | Evidence |
|---|---|---|---|---|---|
| Genomic Benchmarks root: genomic-benchmarks | DNA sequence analysis official-taxonomy · high | explicitly-in-scope | 3 tasks Benchmark dataset classification tasks. | package-1.0.0-snapshot as of 2026-07-22 | genomic-benchmarks-paper-definition-evidence |
| LAB-Bench SeqQA — Primers-to-restriction enzymes root: lab-bench | DNA sequence analysis official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-seqqa-pcr-geneprimers-enz-evidence-paper |
| LAB-Bench SeqQA — Primers to amplicon length root: lab-bench | DNA sequence analysis official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-seqqa-pcr-primers-len-evidence-paper |
| LAB-Bench SeqQA — GC percentage root: lab-bench | DNA sequence analysis official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-seqqa-prop-seq-gcpercent-evidence-paper |
| LAB-Bench SeqQA — Restriction-fragment lengths root: lab-bench | DNA sequence analysis official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-seqqa-re-seq-lenfrags-evidence-paper |
| LAB-Bench SeqQA — Restriction-fragment count root: lab-bench | DNA sequence analysis official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-seqqa-re-seq-numfrags-evidence-paper |
Official evaluations connected to these benchmarks
Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.
| Work | Provider / class | Related runs |
|---|---|---|
| Genomic benchmarks: a collection of datasets for genomic sequence classification | Masaryk University, CEITEC Masaryk University benchmark_creator | genomic-benchmarks-creator-full |
| LAB-Bench: Measuring Capabilities of Language Models for Biology Research | FutureHouse benchmark_creator | lab-bench-seqqa-pcr-geneprimers-enz-creator-mcqlab-bench-seqqa-pcr-primers-len-creator-mcqlab-bench-seqqa-prop-seq-gcpercent-creator-mcqlab-bench-seqqa-re-seq-lenfrags-creator-mcqlab-bench-seqqa-re-seq-numfrags-creator-mcq |