Paper and work explorer
Filter creator papers, provider releases, and independent studies by benchmark relationship, realized scope, and reporting completeness.
49 works · Download works CSV · Download benchmark-use CSV
| Work | Type / source | Published | Review | Benchmark usage | Completeness |
|---|---|---|---|---|---|
| A benchmark comparison of CRISPRn guide-RNA design algorithms and generation of small single and dual-targeting libraries to boost screening efficiency Joint Astrazeneca-Cancer Research Horizons Functional Genomics Centre | paper benchmark creator | 2025-02-26 | AI-assisted owner-reviewed | 2 benchmark(s) benchmark creation, evaluation | partial |
| AB-Bind: Antibody binding mutational database for computational affinity predictions Massachusetts Institute of Technology · Pfizer Inc. | paper benchmark creator | 2015-11-06 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation, fine tuning | partial |
| AbBiBench: A Benchmark for Antibody Binding Affinity Maturation and Design McWilliams School of Biomedical Informatics, UTHealth Houston · Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology · Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, UTHealth Houston | preprint benchmark creator | 2025-05-23 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation | partial |
| An integrative approach to protein sequence design through multiobjective optimization University of California, San Francisco · Quantitative Biosciences Institute · Chan Zuckerberg Biohub | paper benchmark creator | 2024-07-11 | AI-assisted owner-reviewed | 3 benchmark(s) benchmark creation, evaluation | partial |
| Advancing Claude in healthcare and the life sciences Anthropic | official-release official model provider | 2026-01-11 | manual | 5 benchmark(s) evaluation, benchmark creation, external result summary | partial |
| Claude for Life Sciences Anthropic | official-release official model provider | 2025-10-20 | manual | 1 benchmark(s) evaluation | partial |
| Claude Sonnet 4.5 System Card Anthropic | system-card official model provider | 2025-09-29 | manual | Metadata only | non evaluation |
| Claude Sonnet 4.6 System Card Anthropic | system-card official model provider | 2026-02-17 | manual | Metadata only | non evaluation |
| ATOM3D: Tasks On Molecules in Three Dimensions Stanford University | paper benchmark creator | 2021-12-07 | manual | Metadata only | non evaluation |
| BEACON: Benchmark for Comprehensive RNA Tasks and Language Models Shanghai Artificial Intelligence Laboratory · University of Sydney · University of Hong Kong · Shanghai Jiao Tong University · Fudan University · Chinese University of Hong Kong | paper benchmark creator | 2024-12-10 | manual | Metadata only | non evaluation |
| Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models Shanghai Artificial Intelligence Laboratory · University of Science and Technology of China · University of Sydney · University of Toronto · Chinese University of Hong Kong · Shanghai Jiao Tong University · Fudan University · Shanghai Innovation Institute | paper benchmark creator | 2025-11-04 | manual | Metadata only | non evaluation |
| Evaluating Claude's bioinformatics research capabilities with BioMysteryBench Anthropic | official-release benchmark creator | 2026-04-29 | manual | Metadata only | non evaluation |
| BioSecBench-Surveillance: A Verifiable Benchmark for AI Agents in Pathogen Genomic Surveillance LatchBio · Aclid | preprint benchmark creator | 2026-07-21 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation | partial |
| BioSecBench-Surveillance repository result snapshot LatchBio | official-release benchmark creator | 2026-07-09 | AI-assisted owner-reviewed | 1 benchmark(s) evaluation | normalized |
| BixBench: a Comprehensive Benchmark for LLM-based Agents in Computational Biology FutureHouse · ScienceMachine | preprint benchmark creator | 2025-02-28 | manual | Metadata only | non evaluation |
| BixBench v1.5 dataset and evaluation release FutureHouse · ScienceMachine | official-release benchmark creator | 2025-09-26 | manual | Metadata only | non evaluation |
| BLADE: Benchmarking Language Model Agents for Data-Driven Science University of Washington · UC Berkeley · New York University · Stanford University · University of British Columbia · Microsoft · George Washington University | paper benchmark creator | 2024-11-16 | manual | Metadata only | non evaluation |
| Continuous Automated Model EvaluatiOn (CAMEO) Complementing the Critical Assessment of Structure Prediction in CASP12 SIB Swiss Institute of Bioinformatics · Biozentrum University of Basel | paper benchmark creator | 2017-12-17 | manual | Metadata only | non evaluation |
| Beyond Single Chains: Benchmarking Macromolecular Complex Prediction Methods With the Continuous Automated Model EvaluatiOn (CAMEO) SIB Swiss Institute of Bioinformatics · Biozentrum University of Basel | paper benchmark creator | 2025-09-28 | manual | Metadata only | non evaluation |
| CASP16 official competition and results archive Prediction Center · CASP organizing committee | competition-site benchmark creator | 2024-05-01 | manual | Metadata only | non evaluation |
| Assessment of Pharmaceutical Protein-Ligand Pose and Affinity Predictions in CASP16 University of California San Diego · University of Basel · University of California Davis | paper benchmark creator | 2025-10-04 | manual | Metadata only | non evaluation |
| CASP16 Protein Monomer Structure Prediction Assessment University of Texas Southwestern Medical Center · University of California Davis | paper benchmark creator | 2025-08-17 | manual | Metadata only | non evaluation |
| Assessment of Protein Complex Predictions in CASP16: Are We Making Progress? University of Texas Southwestern Medical Center · University of California Davis · Stanford University | paper benchmark creator | 2025-10-31 | manual | Metadata only | non evaluation |
| CASP17 official competition Prediction Center · CASP organizing committee | competition-site benchmark creator | 2026-03-31 | manual | Metadata only | non evaluation |
| Agentic systems are adept at solving well-scoped, verifiable problems in computational biology Genentech · Roche | preprint benchmark creator | 2026-04-09 | manual | Metadata only | non evaluation |
| Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing Data Science in Systems Biology, Technical University of Munich · Chair of Computational Systems Biology, University of Hamburg · Institute for Advanced Study, Technical University of Munich · National Institute of Diabetes, Digestive, and Kidney Diseases, National Institutes of Health · Institute of Mathematics and Computer Science, University of Southern Denmark · Munich Data Science Institute (MDSI), Technical University of Munich · Department of Computer Science, Bioinformatics, Vrije Universiteit Amsterdam | paper benchmark creator | 2025-09-11 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation | partial |
| Crafted experiments to evaluate feature selection methods for single-cell RNA-seq data Lineberger Comprehensive Cancer Center, University of North Carolina · University of North Carolina at Chapel Hill | paper benchmark creator | 2025-03-19 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation | partial |
| Enhancing molecular property prediction with auxiliary learning and task-specific adaptation The Ohio State University | paper independent reproduction | 2024-07-24 | AI-assisted owner-reviewed | 1 benchmark(s) fine tuning, evaluation | partial |
| Explainable protein-protein binding affinity prediction via fine-tuning protein language models Department of Computer Science and Engineering, Shiv Nadar University, Delhi-NCR · School of Informatics, University of Edinburgh · EaStCHEM School of Chemistry, University of Edinburgh | preprint independent reproduction | 2026-04-01 | AI-assisted owner-reviewed | 3 benchmark(s) evaluation, fine tuning, training | partial |
| FLIP: Benchmark tasks in fitness landscape inference for proteins Technical University of Munich · Microsoft Research New England · California Institute of Technology · University of California Berkeley · Massachusetts Institute of Technology · Salesforce Research | paper benchmark creator | 2021-10-11 | manual | Metadata only | non evaluation |
| GeneBench-Pro: Evaluating Multistage Statistical Reasoning in Genomics, Quantitative Biology, and Translational Biomedicine OpenAI | preprint benchmark creator | 2026-06-30 | manual | Metadata only | non evaluation |
| Genomic benchmarks: a collection of datasets for genomic sequence classification Masaryk University · CEITEC Masaryk University | paper benchmark creator | 2023-05-01 | manual | Metadata only | non evaluation |
| GuacaMol: Benchmarking Models for de Novo Molecular Design BenevolentAI | paper benchmark creator | 2019-03-19 | manual | Metadata only | non evaluation |
| LAB-Bench: Measuring Capabilities of Language Models for Biology Research FutureHouse | paper benchmark creator | 2024-07-14 | manual | Metadata only | non evaluation |
| LifeSciBench: Evaluating Language Models on Realistic, Expert-Level Tasks in the Life Sciences OpenAI · Tacit Labs | preprint benchmark creator | 2026-06-17 | manual | Metadata only | non evaluation |
| MoleculeNet: a benchmark for molecular machine learning Stanford University · DeepChem | paper benchmark creator | 2017-10-31 | manual | Metadata only | non evaluation |
| PPB-Affinity: Protein-Protein Binding Affinity dataset for AI-based protein drug discovery Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Pearl River Delta · Cyagen Biosciences (Suzhou) Inc. · Cyagen Biosciences (Guangzhou) Inc. · Cyagen Biomodels (Guangzhou) Co., Ltd · Department of Pain Medicine, Shenzhen Nanshan People’s Hospital, Shenzhen University Medical School | paper benchmark creator | 2024-12-03 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation, training | partial |
| ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design University of Oxford · Harvard Medical School · Seismic Therapeutic · Harvard University · Centre for Genomic Regulation · Universitat Pompeu Fabra · Broad Institute | paper benchmark creator | 2023-12-10 | manual | Metadata only | non evaluation |
| A Fine-tuning Dataset and Benchmark for Large Language Models for Protein Understanding Toursun Synbio · Johns Hopkins University · University of Cambridge · Shanghai Institute for Biomedical and Pharmaceutical Technologies · Shanghai AI Laboratory · Shanghai Jiao Tong University · UNSW Sydney | preprint benchmark creator | 2024-06-08 | manual | Metadata only | non evaluation |
| scBench: Evaluating AI Agents on Single-Cell RNA-seq Analysis LatchBio | preprint benchmark creator | 2026-02-09 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation, evaluation | partial |
| Benchmarking atlas-level data integration in single-cell genomics Helmholtz Zentrum München · Technical University of Munich | paper benchmark creator | 2021-12-23 | manual | Metadata only | non evaluation |
| Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab University of Toronto · SickKids · Axiom · Mila · Vector Institute | paper benchmark creator | 2025-11-30 | manual | Metadata only | non evaluation |
| Single-cell omics arena: evaluation of large language models for automatic cell-type annotations on single-cell omics data via RNA-seq bridging University of California, Irvine | paper benchmark creator | 2025-11-24 | AI-assisted owner-reviewed | 1 benchmark(s) benchmark creation | non evaluation |
| Single-cell Omics Arena repository result snapshot University of California, Irvine | official-release benchmark creator | 2025-08-03 | AI-assisted owner-reviewed | 1 benchmark(s) evaluation | partial |
| SpatialBench: Can Agents Analyze Real-World Spatial Biology Data? LatchBio | preprint benchmark creator | 2025-12-26 | manual | 1 benchmark(s) benchmark creation, evaluation | normalized |
| SpatialBench 159-evaluation repository snapshot LatchBio | official-release benchmark creator | 2026-06-10 | manual | 1 benchmark(s) benchmark creation, evaluation | normalized |
| System Card: Claude Opus 5 Anthropic | system-card official model provider | 2026-07-24 | AI-assisted owner-reviewed | 4 benchmark(s) evaluation | partial |
| Evaluating Protein Transfer Learning with TAPE University of California Berkeley | paper benchmark creator | 2019-12-08 | manual | Metadata only | non evaluation |
| Paving the way for AI agents in biology Anthropic | official-release benchmark creator | 2025-05-20 | manual | Metadata only | non evaluation |
No work matches this filter combination.
Joint Astrazeneca-Cancer Research Horizons Functional Genomics Centre
Massachusetts Institute of Technology · Pfizer Inc.
McWilliams School of Biomedical Informatics, UTHealth Houston · Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology · Texas Therapeutics Institute, Brown Foundation Institute of Molecular Medicine, UTHealth Houston
University of California, San Francisco · Quantitative Biosciences Institute · Chan Zuckerberg Biohub
Anthropic
Anthropic
Anthropic
Anthropic
Stanford University
Shanghai Artificial Intelligence Laboratory · University of Sydney · University of Hong Kong · Shanghai Jiao Tong University · Fudan University · Chinese University of Hong Kong
Shanghai Artificial Intelligence Laboratory · University of Science and Technology of China · University of Sydney · University of Toronto · Chinese University of Hong Kong · Shanghai Jiao Tong University · Fudan University · Shanghai Innovation Institute
Anthropic
LatchBio · Aclid
LatchBio
FutureHouse · ScienceMachine
FutureHouse · ScienceMachine
University of Washington · UC Berkeley · New York University · Stanford University · University of British Columbia · Microsoft · George Washington University
SIB Swiss Institute of Bioinformatics · Biozentrum University of Basel
SIB Swiss Institute of Bioinformatics · Biozentrum University of Basel
Prediction Center · CASP organizing committee
University of California San Diego · University of Basel · University of California Davis
University of Texas Southwestern Medical Center · University of California Davis
University of Texas Southwestern Medical Center · University of California Davis · Stanford University
Prediction Center · CASP organizing committee
Genentech · Roche
Data Science in Systems Biology, Technical University of Munich · Chair of Computational Systems Biology, University of Hamburg · Institute for Advanced Study, Technical University of Munich · National Institute of Diabetes, Digestive, and Kidney Diseases, National Institutes of Health · Institute of Mathematics and Computer Science, University of Southern Denmark · Munich Data Science Institute (MDSI), Technical University of Munich · Department of Computer Science, Bioinformatics, Vrije Universiteit Amsterdam
Lineberger Comprehensive Cancer Center, University of North Carolina · University of North Carolina at Chapel Hill
The Ohio State University
Department of Computer Science and Engineering, Shiv Nadar University, Delhi-NCR · School of Informatics, University of Edinburgh · EaStCHEM School of Chemistry, University of Edinburgh
Technical University of Munich · Microsoft Research New England · California Institute of Technology · University of California Berkeley · Massachusetts Institute of Technology · Salesforce Research
OpenAI
Masaryk University · CEITEC Masaryk University
BenevolentAI
FutureHouse
OpenAI · Tacit Labs
Stanford University · DeepChem
Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Pearl River Delta · Cyagen Biosciences (Suzhou) Inc. · Cyagen Biosciences (Guangzhou) Inc. · Cyagen Biomodels (Guangzhou) Co., Ltd · Department of Pain Medicine, Shenzhen Nanshan People’s Hospital, Shenzhen University Medical School
University of Oxford · Harvard Medical School · Seismic Therapeutic · Harvard University · Centre for Genomic Regulation · Universitat Pompeu Fabra · Broad Institute
Toursun Synbio · Johns Hopkins University · University of Cambridge · Shanghai Institute for Biomedical and Pharmaceutical Technologies · Shanghai AI Laboratory · Shanghai Jiao Tong University · UNSW Sydney
LatchBio
Helmholtz Zentrum München · Technical University of Munich
University of Toronto · SickKids · Axiom · Mila · Vector Institute
University of California, Irvine
University of California, Irvine
LatchBio
LatchBio
Anthropic
University of California Berkeley
Anthropic