paper · benchmark creator

AB-Bind: Antibody binding mutational database for computational affinity predictions

Massachusetts Institute of Technology · Pfizer Inc. · 2015-11-06

Relationship layer

Benchmark usage

This table records what the work did with each benchmark before attempting to normalize a run. Partial claims remain visible without being treated as comparable evaluations.

benchmark creation

ab-bind-antibody-binding-mutational-database-for-compu-ab-bind-1-use

Non-evaluationunknown

Benchmark: AB-Bind · version Not reported

Selection
not applicable
Models
Not reported / not applicable
Metrics
Not reported / not applicable
Linked runs
None

Not reported / unresolved: No explicit AB-Bind version identifier is reported.; The official repository metadata reports no license.; The source does not reconcile the conflicting broad multiple-mutation count with its detailed partition.

AI-assisted double-pass extraction; values are limited to independently supported claims.

Evidence
  • section: Results > AB-Bind database
    Supports: /relation_type
  • section: Abstract
    Supports: /benchmark_id

evaluation

ab-bind-antibody-binding-mutational-database-for-compu-ab-bind-2-use

Partialunknown

Benchmark: AB-Bind · version Not reported

Selection
not reported
Metrics
Not reported / not applicable
Linked runs
None

Not reported / unresolved: No random seed is reported.; Realized n is not printed for the low- and medium-confidence ROC subsets.; Several method-specific Pearson correlations and confidence intervals appear only in referenced Supporting Information.; Provider identities are not printed for several scoring methods.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats

Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.

Evidence
  • section: Results > Scoring potentials
    Supports: /relation_type
  • section: Discussion
    Supports: /benchmark_id
  • section: Results > Scoring potentials
    Supports: /model_ids
  • section: Results > Scoring potentials
    Supports: /model_ids
  • section: Results > Scoring potentials
    Supports: /model_ids
  • section: Results > Scoring potentials
    Supports: /model_ids
  • section: Materials and Methods > Structure generation
    Supports: /model_ids
  • section: Materials and Methods > Structure generation
    Supports: /model_ids
  • other: Document pages 13 and 17, Structure generation and Reference 61
    Supports: /model_ids

fine tuning

ab-bind-antibody-binding-mutational-database-for-compu-ab-bind-3-use

Non-evaluationunknown

Benchmark: AB-Bind · version Not reported

Selection
not applicable
Models
FoldX
Metrics
Not reported / not applicable
Linked runs
None

Not reported / unresolved: The fitting split, realized n, regression specification, and numeric results are not reported; the paper says data not shown.

AI-assisted double-pass extraction; values are limited to independently supported claims.

Evidence
  • section: Discussion
    Supports: /relation_type
  • section: Discussion
    Supports: /benchmark_id
  • other: Document pages 12–13, Discussion and Structure generation
    Supports: /model_ids
  • section: Discussion
    Supports: /scope

Normalized evaluation runs

This source has no normalized model run. It may be a creator-only source or a partial/non-evaluation benchmark use.