scIB
A 13-task benchmark of single-cell data integration across simulated, scRNA-seq, and scATAC-seq settings, evaluated with 14 batch-removal and biological-conservation metrics.
Scientific task · Cellular and spatial analysis
Single-cell data integration
Integrate single-cell datasets across batches
单细胞数据整合
Definition and search aliases
- Permanent ID
single-cell-data-integration- Aliases
- single-cell batch integration, batch correction, scIB
- Deprecated aliases
- None
- Hierarchy
- Leaf task under Omics and cellular analysis
Coverage
1 benchmark families cover this task
Evidence-backed count claims
Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.
| Benchmark | Mapped task | Coverage | Count | Version | Evidence |
|---|---|---|---|---|---|
| scIB root: scib | Single-cell data integration official-taxonomy · high | explicitly-in-scope | 13 tasks Atlas-level integration tasks. | paper-2021 | scib-paper-definition-evidence |
Official evaluations connected to these benchmarks
Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.
| Work | Provider / class | Related runs |
|---|---|---|
| Benchmarking atlas-level data integration in single-cell genomics | Helmholtz Zentrum München, Technical University of Munich benchmark_creator | scib-creator-full |