LAB-Bench
A practical biology-research suite of 2,457 multiple-choice questions across eight broad categories and 31 versioned task files, with public and private contamination-monitoring splits.
Scientific task · Scientific workflow
Scientific database retrieval
Retrieve a scientific record
科学数据库检索
Definition and search aliases
- Permanent ID
scientific-database-retrieval- Aliases
- database query, record retrieval
- Deprecated aliases
- None
- Hierarchy
- Leaf task under Scientific workflow and systems analysis
Coverage
1 benchmark families cover this task
LAB-Bench DbQA
Database-retrieval category spanning 10 genomics, clinical, protein, regulatory, vaccine-response, and viral-PPI tasks.
LAB-Bench DbQA — Disease gene associations
Identifies genes associated with a phenotype in DisGeNET but not OMIM.
LAB-Bench DbQA — Gene location
Retrieves human-gene cytogenetic locations from the stated Ensembl release.
LAB-Bench DbQA — miRNA targets
Retrieves computationally predicted human miRNA targets from miRDB.
LAB-Bench DbQA — Mouse tumor gene sets
Retrieves genes in Mammalian Phenotype Tumor Ontology gene sets.
LAB-Bench DbQA — Oncogenic signatures
Retrieves membership in MSigDB C6 oncogenic-signature gene sets.
LAB-Bench DbQA — GTRD transcription-factor binding sites
Retrieves promoter-region transcription-factor binding-site annotations from GTRD.
LAB-Bench DbQA — Protein variant from sequence
Uses a protein sequence and ClinVar lookup to identify benign or pathogenic variants.
LAB-Bench DbQA — Protein variant with multiple sequences
Identifies ClinVar variant pathogenicity while reasoning across multiple protein sequences.
LAB-Bench DbQA — Vaccine response gene sets
Retrieves membership in MSigDB vaccine-response gene sets.
LAB-Bench DbQA — Viral protein–protein interactions
Retrieves predicted human interaction partners of viral proteins from P-HIPSter.
Evidence-backed count claims
Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.
| Benchmark | Mapped task | Coverage | Count | Version | Evidence |
|---|---|---|---|---|---|
| LAB-Bench root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 650 questions Questions across the ten formal DbQA child tasks. | repository-998a8e0 | lab-bench-evidence-repository |
| LAB-Bench DbQA root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 650 questions questions across formal child tasks | repository-998a8e0 | lab-bench-dbqa-evidence-repository |
| LAB-Bench DbQA — Disease gene associations root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-dga-evidence-paper |
| LAB-Bench DbQA — Gene location root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-gene-location-evidence-paper |
| LAB-Bench DbQA — miRNA targets root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-mirna-targets-evidence-paper |
| LAB-Bench DbQA — Mouse tumor gene sets root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 100 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-mouse-tumor-gene-sets-evidence-paper |
| LAB-Bench DbQA — Oncogenic signatures root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-oncogenic-signatures-evidence-paper |
| LAB-Bench DbQA — GTRD transcription-factor binding sites root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-tfbs-gtrd-evidence-paper |
| LAB-Bench DbQA — Protein variant from sequence root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 100 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-variant-from-sequence-evidence-paper |
| LAB-Bench DbQA — Protein variant with multiple sequences root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 100 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-variant-multi-sequence-evidence-paper |
| LAB-Bench DbQA — Vaccine response gene sets root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-vax-response-evidence-paper |
| LAB-Bench DbQA — Viral protein–protein interactions root: lab-bench | Scientific database retrieval official-track · high | explicitly-in-scope | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-viral-ppi-evidence-paper |
Official evaluations connected to these benchmarks
Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.