Biology-Instructions
A multi-omics sequence-instruction suite with 21 formal predictive tasks across DNA, RNA, protein, and multi-molecule inputs; the final paper reports task-specific held-out evaluations rather than a single aggregate score.
Scientific task · Sequence and regulation
Promoter detection
Identify promoter regions or promoter activity from DNA sequence.
启动子识别
Nucleic-acid result atlas: T02 results (exact)
Definition and search aliases
- Permanent ID
promoter-detection- Aliases
- core promoter prediction
- Deprecated aliases
- None
- Hierarchy
- Leaf task under DNA regulation and perturbation
Coverage
2 benchmark families cover this task
Biology-Instructions Core Promoter Detection
Binary detection of a core promoter in a short DNA sequence, evaluated with Matthews correlation coefficient.
Biology-Instructions Promoter Detection 300
Binary promoter detection in a 300-base-pair DNA context, evaluated with Matthews correlation coefficient.
Genomic Benchmarks
A versioned collection of nine DNA sequence-classification datasets covering regulatory elements, promoters, enhancers, open chromatin, species, and coding-context discrimination.
Evidence-backed count claims
Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.
| Benchmark | Mapped task | Coverage | Count | Version | Evidence |
|---|---|---|---|---|---|
| Biology-Instructions root: bioinstruction | Promoter detection official-track · high | explicitly-in-scope | 2 tracks Formal evaluation tracks (Core Promoter Detection and Promoter Detection 300). | emnlp-2025 | bioinstruction-evidence-paper |
| Biology-Instructions Core Promoter Detection root: bioinstruction | Promoter detection official-track · high | explicitly-in-scope | 118392 examples distinct examples across the published train, validation, and test splits | emnlp-2025 | bioinstruction-cpd-evidence-paper |
| Biology-Instructions Promoter Detection 300 root: bioinstruction | Promoter detection official-track · high | explicitly-in-scope | 118392 examples distinct examples across the published train, validation, and test splits | emnlp-2025 | bioinstruction-pd300-evidence-paper |
| Genomic Benchmarks root: genomic-benchmarks | Promoter detection official-taxonomy · high | explicitly-in-scope | 1 tasks Benchmark dataset classification tasks. | package-1.0.0-snapshot as of 2026-07-22 | genomic-benchmarks-paper-definition-evidence |
Official evaluations connected to these benchmarks
Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.