Scientific task · Property and function prediction

Protein function annotation

Assign molecular function

蛋白质功能注释

ProteinProperty and function prediction

Definition and search aliases

Permanent ID
protein-function-annotation
Aliases
enzyme function prediction, EC prediction
Deprecated aliases
None
Hierarchy
Leaf task under Protein property and function prediction

Coverage

1 benchmark families cover this task

suitecomplete

Biology-Instructions

A multi-omics sequence-instruction suite with 21 formal predictive tasks across DNA, RNA, protein, and multi-molecule inputs; the final paper reports task-specific held-out evaluations rather than a single aggregate score.

Protein function annotation

Evidence-backed count claims

Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.

BenchmarkMapped taskCoverageCountVersionEvidence
Biology-Instructions
root: bioinstruction
Protein function annotation
official-track · high
explicitly-in-scope1 tracks
Formal evaluation tracks (Enzyme Commission Number Prediction).
emnlp-2025bioinstruction-evidence-paper
Biology-Instructions Enzyme Commission Number Prediction
root: bioinstruction
Protein function annotation
official-track · high
explicitly-in-scope19199 examples
distinct examples across the published train, validation, and test splits
emnlp-2025bioinstruction-ec-evidence-paper

Official evaluations connected to these benchmarks

Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.

WorkProvider / classRelated runs
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language ModelsShanghai Artificial Intelligence Laboratory, University of Science and Technology of China, University of Sydney, University of Toronto, Chinese University of Hong Kong, Shanghai Jiao Tong University, Fudan University, Shanghai Innovation Institute
benchmark_creator
bioinstruction-aan-closed-baselines
bioinstruction-aan-creator-systems
bioinstruction-aan-open-baselines
bioinstruction-apa-closed-baselines
bioinstruction-apa-creator-systems
bioinstruction-apa-open-baselines
bioinstruction-cpd-closed-baselines
bioinstruction-cpd-creator-systems
bioinstruction-cpd-open-baselines
bioinstruction-crispr-on-target-closed-baselines
bioinstruction-crispr-on-target-creator-systems
bioinstruction-crispr-on-target-open-baselines
bioinstruction-ea-closed-baselines
bioinstruction-ea-creator-systems
bioinstruction-ea-open-baselines
bioinstruction-ec-closed-baselines
bioinstruction-ec-creator-systems
bioinstruction-ec-open-baselines
bioinstruction-emp-closed-baselines
bioinstruction-emp-creator-systems
bioinstruction-emp-open-baselines
bioinstruction-epi-closed-baselines
bioinstruction-epi-creator-systems
bioinstruction-epi-open-baselines
bioinstruction-fluorescence-closed-baselines
bioinstruction-fluorescence-creator-systems
bioinstruction-fluorescence-open-baselines
bioinstruction-modification-closed-baselines
bioinstruction-modification-creator-systems
bioinstruction-modification-open-baselines
bioinstruction-mrl-closed-baselines
bioinstruction-mrl-creator-systems
bioinstruction-mrl-open-baselines
bioinstruction-ncrna-closed-baselines
bioinstruction-ncrna-creator-systems
bioinstruction-ncrna-open-baselines
bioinstruction-pd300-closed-baselines
bioinstruction-pd300-creator-systems
bioinstruction-pd300-open-baselines
bioinstruction-prs-closed-baselines
bioinstruction-prs-creator-systems
bioinstruction-prs-open-baselines
bioinstruction-rpi-closed-baselines
bioinstruction-rpi-creator-systems
bioinstruction-rpi-open-baselines
bioinstruction-sirna-closed-baselines
bioinstruction-sirna-creator-systems
bioinstruction-sirna-open-baselines
bioinstruction-solubility-closed-baselines
bioinstruction-solubility-creator-systems
bioinstruction-solubility-open-baselines
bioinstruction-stability-closed-baselines
bioinstruction-stability-creator-systems
bioinstruction-stability-open-baselines
bioinstruction-tb-human-closed-baselines
bioinstruction-tb-human-creator-systems
bioinstruction-tb-human-open-baselines
bioinstruction-tb-mouse-closed-baselines
bioinstruction-tb-mouse-creator-systems
bioinstruction-tb-mouse-open-baselines
bioinstruction-thermostability-closed-baselines
bioinstruction-thermostability-creator-systems
bioinstruction-thermostability-open-baselines