Biology-Instructions
A multi-omics sequence-instruction suite with 21 formal predictive tasks across DNA, RNA, protein, and multi-molecule inputs; the final paper reports task-specific held-out evaluations rather than a single aggregate score.
Scientific task · Molecular interaction
Transcription-factor binding-site prediction
Predict transcription-factor binding sites or occupancy from sequence or genomic context.
转录因子结合位点预测
Definition and search aliases
- Permanent ID
transcription-factor-binding-site-prediction- Aliases
- TFBS prediction
- Deprecated aliases
- None
- Hierarchy
- Leaf task under DNA regulation and perturbation
Coverage
2 benchmark families cover this task
Biology-Instructions Human Transcription Binding Sites Detection
Binary detection of transcription-factor binding sites in human DNA sequences, evaluated with Matthews correlation coefficient.
Biology-Instructions Mouse Transcription Binding Sites Detection
Binary detection of transcription-factor binding sites in mouse DNA sequences, evaluated with Matthews correlation coefficient.
LAB-Bench DbQA — GTRD transcription-factor binding sites
Retrieves promoter-region transcription-factor binding-site annotations from GTRD.
Evidence-backed count claims
Each row keeps its original unit and basis. Rows with different units or overlapping mappings are never added.
| Benchmark | Mapped task | Coverage | Count | Version | Evidence |
|---|---|---|---|---|---|
| Biology-Instructions root: bioinstruction | Transcription-factor binding-site prediction official-track · high | explicitly-in-scope | 2 tracks Formal evaluation tracks (Human and mouse Transcription Binding Sites Detection). | emnlp-2025 | bioinstruction-evidence-paper |
| Biology-Instructions Human Transcription Binding Sites Detection root: bioinstruction | Transcription-factor binding-site prediction official-track · high | explicitly-in-scope | 138344 examples distinct examples across the published train, validation, and test splits | emnlp-2025 | bioinstruction-tb-human-evidence-paper |
| Biology-Instructions Mouse Transcription Binding Sites Detection root: bioinstruction | Transcription-factor binding-site prediction official-track · high | explicitly-in-scope | 100028 examples distinct examples across the published train, validation, and test splits | emnlp-2025 | bioinstruction-tb-mouse-evidence-paper |
| LAB-Bench DbQA — GTRD transcription-factor binding sites root: lab-bench | Transcription-factor binding-site prediction official-track · high | observed | 50 questions questions across public and private splits | repository-998a8e0 | lab-bench-dbqa-tfbs-gtrd-evidence-paper |
Official evaluations connected to these benchmarks
Runs are included only for benchmark records mapped here (and formal child tracks when a mapped suite is the root). A task mapping does not imply that every run isolates this task.