Tier C · benchmark_suite

Numeric results available

ERNIE-RNA downstream evaluation study

One-time model study spanning 15 named data packages; PrismNet is additionally stratified into 17 HeLa RBP assays.

Result coverage

231 result rows across 12 protocols

Primary sources: primary_sources_screened
Related works: index_screen_complete_with_logged_api_limits
Authority readiness: usable_with_caveats
Literature cutoff: 2026-08-06

Track	Numeric coverage	Evidence closure	Blocker
`B34-TR01` ERNIE-RNA downstream evaluation study — RNA secondary-structure base-pair prediction	numeric_results_available 231 results	closed_with_numeric_evidence	NR
`B34-TR02` ERNIE-RNA downstream evaluation study — RNA contact or distance-map prediction	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B34-TR03` ERNIE-RNA downstream evaluation study — Translation efficiency or ribosome-load prediction	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B34-TR04` ERNIE-RNA downstream evaluation study — RNA–protein binding prediction	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B34-TR05` ERNIE-RNA downstream evaluation study — ncRNA family classification	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B34-TR06` ERNIE-RNA downstream evaluation study — Splice-site prediction	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B34-TR07` ERNIE-RNA downstream evaluation study — Alternative polyadenylation quantification	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete

Protocol-level results

Choose the evaluation unit before comparing scores.

Each card keeps the four claim types inside one protocol + metric fingerprint.

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

Precision (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Precisionbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

RiNALMo0.781Precision · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-3F145E1163BCBC2EB0FB6F2E

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

Recall (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Recallbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

ERNIE-RNA attn-mapa;ERNIE-RNAa0.735 / 0.735Recall · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-C4F4B332C1B9AD5678F4C692

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

F1-Score (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

F1binary · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

ERNIE-RNA attn-mapa0.748F1 · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2F67BD4D683DDF01000A6473

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

Precision (macro-avg) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Precisionbinary/per-position · 20 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

Uni-RNAb0.894Precision · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-F792F9BAD92AD70B83A85E1D

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

Recall (macro-avg) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Recallbinary/per-position · 20 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

ERNIE-RNA attn-mapa0.867Recall · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A4D2C43AC4D0420D06649FE1

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-1m (80) test set

Full results →

F1-Score (macro-avg) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

F1binary · 20 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

ERNIE-RNA attn-mapa0.873F1 · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-9B75A19F0F57BE59261A7ED9

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-new

Full results →

Precision (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Precisionbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

LinearFold0.643Precision · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-D1354511868A0B56DE713F76

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-new

Full results →

Recall (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Recallbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

CONTRAfold0.737Recall · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-774D4333D19F3F49752EF691

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

bpRNA-new

Full results →

F1-Score (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

F1binary · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

ERNIE-RNA attn-map frozena0.646F1 · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-CA2DA3D04F351EE8C142F3C4

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

RNA3DB-2D

Full results →

Precision (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Precisionbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

LinearFold0.72Precision · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-EEB2C9AF2C9396578EC0B777

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

RNA3DB-2D

Full results →

Recall (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

Recallbinary/per-position · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

CONTRAfold0.774Recall · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-291F4CF4CFC385521AB54C2C

RNA secondary-structure base-pair prediction · B34-TR01 · same_source_table

RNA3DB-2D

Full results →

F1-Score (binary) · official test set · method-specific mode exactly as row label; unified downstream setup where applicable

F1binary · 19 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

LinearFold0.661F1 · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2A6203A77FC6CB135DA0E8AA

Tasks & tracks

B34-TR01
ERNIE-RNA downstream evaluation study — RNA secondary-structure base-pair prediction
B34-TR02
ERNIE-RNA downstream evaluation study — RNA contact or distance-map prediction
B34-TR03
ERNIE-RNA downstream evaluation study — Translation efficiency or ribosome-load prediction
B34-TR04
ERNIE-RNA downstream evaluation study — RNA–protein binding prediction
B34-TR05
ERNIE-RNA downstream evaluation study — ncRNA family classification
B34-TR06
ERNIE-RNA downstream evaluation study — Splice-site prediction
B34-TR07
ERNIE-RNA downstream evaluation study — Alternative polyadenylation quantification

Official links

License: MIT code; dataset-specific
Access: open

Atlas crosswalk

NR
unmapped