BEACON
Thirteen native tasks; some reuse OpenVaccine, Optimus and CRISPR datasets.
13 benchmark-wide protocols · 221 benchmark-wide rows (not a task subtotal)D3 · Function, expression & molecular phenotype
Translation efficiency or ribosome-load prediction
Predict mean ribosome loading or translation efficiency.
Task definition
- Input granularity
- 5′UTR/CDS sequence
- Biological target
- MRL or translation efficiency
- Output representation
- continuous value
- ML formulation
- regression
- Counting notes
- NR
Benchmark coverage
5 benchmarks cover this task
RNA-Scope
Board is public; DeepASmRNA and DeeReCT-PolyA/PAS are exposed as distinct tracks; verify exact release and frozen splits before comparative claims.
79 benchmark-wide protocols · 2,093 benchmark-wide rows (not a task subtotal)Benchmarking pre-trained gLMs for RNA sequence applications
Four native study processes; the GTEx tissue-specific splicing evaluation is additionally mapped to the alternative-splicing task family without changing the native-task count.
0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)OmniGenBench
Meta-suite packaging RGB, BEACON, GUE, Genomic Benchmarks and PGB; native_task_count=5 suites, not the sum of their downstream tasks.
0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)ERNIE-RNA downstream evaluation study
One-time model study spanning 15 named data packages; PrismNet is additionally stratified into 17 HeLa RBP assays.
12 benchmark-wide protocols · 231 benchmark-wide rows (not a task subtotal)Evaluation protocols
2 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
PROT-B09-MRL-OFFICIAL-TRAIN-VALIDATION-TEST-SPLIT-MRL-2A11C11D | MRL B09-TR08 | official train/validation/test split MRL | same_table_comparable external_data_policy;inference_budget |
PROT-B10-RIBOSOME-LOADING-OFFICIAL-TEST-R2-C3F79056 | Ribosome Loading B10-TR07 | official test R2 | official_board_comparable external_data_policy;inference_budget |