BEACON
Thirteen native tasks; some reuse OpenVaccine, Optimus and CRISPR datasets.
13 benchmark-wide protocols · 221 benchmark-wide rows (not a task subtotal)D2 · Structure & conformation
RNA contact or distance-map prediction
Predict pairwise contacts or distances without full coordinates.
Task definition
- Input granularity
- sequence/MSA
- Biological target
- 3D proximity
- Output representation
- contact or distance matrix
- ML formulation
- structured prediction
- Counting notes
- NR
Benchmark coverage
2 benchmarks cover this task
ERNIE-RNA downstream evaluation study
One-time model study spanning 15 named data packages; PrismNet is additionally stratified into 17 HeLa RBP assays.
12 benchmark-wide protocols · 231 benchmark-wide rows (not a task subtotal)Evaluation protocols
3 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
PROT-B09-CMP-OFFICIAL-TRAIN-VALIDATION-TEST-SPLIT-CMP-2E0FFE39 | CMP B09-TR02 | official train/validation/test split CMP | same_table_comparable external_data_policy;inference_budget |
PROT-B10-RNA3DB-CONTACT-MAP-SHORT-RANGE-SHORT-L-5-AB97E493 | RNA3DB contact map NR | short-range Short@L/5 | official_board_comparable external_data_policy;inference_budget |
PROT-B10-RNA3DB-CONTACT-MAP-LONG-RANGE-LONG-L-5-33EAE17E | RNA3DB contact map NR | long-range Long@L/5 | official_board_comparable external_data_policy;inference_budget |