ncRNA family classification

Assign ncRNA sequences to functional families.

Task definition

Input granularity: whole sequence
Biological target: RNA family/type
Output representation: multiclass label
ML formulation: classification
Counting notes: NR

Benchmark coverage

7 benchmarks cover this task

B01Numeric results available

Genome Understanding Evaluation (GUE)

28 datasets/tasks in the native packaging; mapped here to five task families.

1 benchmark-wide protocols · 10 benchmark-wide rows (not a task subtotal)

B02Numeric results available

Nucleotide Transformer benchmark

Eighteen downstream tasks are benchmark instances, not eighteen unique task families.

67 benchmark-wide protocols · 821 benchmark-wide rows (not a task subtotal)

B09Numeric results available

BEACON

Thirteen native tasks; some reuse OpenVaccine, Optimus and CRISPR datasets.

13 benchmark-wide protocols · 221 benchmark-wide rows (not a task subtotal)

B10Numeric results available

RNA-Scope

Board is public; DeepASmRNA and DeeReCT-PolyA/PAS are exposed as distinct tracks; verify exact release and frozen splits before comparative claims.

79 benchmark-wide protocols · 2,093 benchmark-wide rows (not a task subtotal)

B12No public numeric result

Benchmarking pre-trained gLMs for RNA sequence applications

Four native study processes; the GTEx tissue-specific splicing evaluation is additionally mapped to the alternative-splicing task family without changing the native-task count.

0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)

B33No public numeric result

OmniGenBench

Meta-suite packaging RGB, BEACON, GUE, Genomic Benchmarks and PGB; native_task_count=5 suites, not the sum of their downstream tasks.

0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)

B34Numeric results available

ERNIE-RNA downstream evaluation study

One-time model study spanning 15 named data packages; PrismNet is additionally stratified into 17 HeLa RBP assays.

12 benchmark-wide protocols · 231 benchmark-wide rows (not a task subtotal)

Evaluation protocols

2 protocol units

Protocol	Track	Split / subset	Comparability
`PROT-B09-NCRNA-OFFICIAL-TRAIN-VALIDATION-TES-0C63FC0C-7D5AA919`	NcRNA B09-TR06	official train/validation/test split NcRNA	same_table_comparable external_data_policy;inference_budget
`PROT-B10-NCRNA-CATEGORY-OFFICIAL-TEST-ACCURACY-960383FF`	ncRNA Category B10-TR01	official test Accuracy	official_board_comparable external_data_policy;inference_budget