Genome Understanding Evaluation (GUE)

28 datasets/tasks in the native packaging; mapped here to five task families.

Result coverage

10 result rows across 1 protocols

Primary sources: primary_sources_screened
Related works: priority_search_complete_with_logged_api_limits
Authority readiness: verified_for_internal_use
Literature cutoff: 2026-08-06

Track	Numeric coverage	Evidence closure	Blocker
`B01-TR01` Genome Understanding Evaluation (GUE) — Genomic element classification	numeric_results_available 10 results	closed_with_numeric_evidence	NR
`B01-TR02` Genome Understanding Evaluation (GUE) — Promoter recognition	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B01-TR03` Genome Understanding Evaluation (GUE) — Enhancer recognition	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B01-TR04` Genome Understanding Evaluation (GUE) — TF binding-site prediction	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete
`B01-TR05` Genome Understanding Evaluation (GUE) — ncRNA family classification	numeric_results_available 0 results	closed_no_eligible_public_numeric_result	related_work_or_configuration_fields_incomplete

Protocol-level results

Choose the evaluation unit before comparing scores.

Each card keeps the four claim types inside one protocol + metric fingerprint.

Genomic element classification · B01-TR01 · same_source_table

28-dataset aggregate

Full results →

28 GUE datasets across seven task categories · official train/validation/test splits · paper fine-tuning protocol; LoRA used for Nucleotide Transformer models

GUE average scoremean across 28 datasets with task-specific MCC/F1 · 10 results

Official baseline

DNABERT-20.668GUE average score · fractionEvidence ↗

Original-table best

DNABERT-2 + GUE further pre-training0.6777GUE average score · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-3D5414ACEBD82B2388042A87