Tier B · benchmark_suite

Numeric results available

Nucleotide Transformer benchmark

Eighteen downstream tasks are benchmark instances, not eighteen unique task families.

B02community_protocolnot_applicable

Result coverage

821 result rows across 67 protocols

Primary sources
primary_sources_screened
Related works
priority_systematic_search_complete
Authority readiness
usable_with_caveats
Literature cutoff
2026-08-06
TrackNumeric coverageEvidence closureBlocker
B02-TR01
Nucleotide Transformer benchmark — Genomic element classification
numeric_results_available
137 results
closed_with_numeric_evidenceNR
B02-TR02
Nucleotide Transformer benchmark — Promoter recognition
numeric_results_available
138 results
closed_with_numeric_evidenceNR
B02-TR03
Nucleotide Transformer benchmark — Enhancer recognition
numeric_results_available
96 results
closed_with_numeric_evidenceNR
B02-TR04
Nucleotide Transformer benchmark — TF binding-site prediction
numeric_results_available
0 results
closed_no_eligible_public_numeric_resultrelated_work_or_configuration_fields_incomplete
B02-TR05
Nucleotide Transformer benchmark — Chromatin accessibility prediction
numeric_results_available
0 results
closed_no_eligible_public_numeric_resultrelated_work_or_configuration_fields_incomplete
B02-TR06
Nucleotide Transformer benchmark — Histone-mark prediction
numeric_results_available
450 results
closed_with_numeric_evidenceNR
B02-TR07
Nucleotide Transformer benchmark — ncRNA family classification
numeric_results_available
0 results
closed_no_eligible_public_numeric_resultrelated_work_or_configuration_fields_incomplete

Protocol-level results

Choose the evaluation unit before comparing scores.

Each card keeps the four claim types inside one protocol + metric fingerprint.

Genomic element classification · B02-TR01 · same_source_table

18-task aggregate

Full results →

18 curated downstream tasks · tenfold cross-validation test folds · task-specific evaluation

Matthews correlation coefficientclassification · 2 results

Official baseline

BPNet;BPNet0.665 / 0.683Matthews correlation coefficient · fractionEvidence ↗

Original-table best

BPNet0.683Matthews correlation coefficient · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-BBF8715F40E40A146DF67D0D

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9me3

Full results →

H3K9me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 13 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-1000g0.48068877Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-47467A0456438298E6A273C7

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9me3

Full results →

H3K9me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 13 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-1000g0.73617656F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-47877A8AABB016049573967D

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9me3

Full results →

H3K9me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 13 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-1000g0.73773586Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A06C19898832340EB8911D1B

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me2

Full results →

H3K4me2 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.61829111Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-DC27B6F85660A3177B969019

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me2

Full results →

H3K4me2 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.80649452F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-FDE5B3131C3512B46A44C7EC

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me2

Full results →

H3K4me2 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.80716292Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-BEFB8B35E6BBE22FFB7AC9AC

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_tata

Full results →

promoter_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.94187757Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-82B589D6318C6CD40AE35C28

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_tata

Full results →

promoter_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.97074878F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-9D0F8C2F93C4C7CF97100B6D

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_tata

Full results →

promoter_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.97075472Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B2656619468E9070F1621A16

Histone-mark prediction · B02-TR06 · official_board_snapshot

H2AFZ

Full results →

H2AFZ · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.51859888Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-57B508453676A37A23D79ADF

Histone-mark prediction · B02-TR06 · official_board_snapshot

H2AFZ

Full results →

H2AFZ · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.75441597F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-F238ECEFB4BAFD51C494736C

Histone-mark prediction · B02-TR06 · official_board_snapshot

H2AFZ

Full results →

H2AFZ · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.75603332Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2E6562A3ADE24E82E084C877

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27me3

Full results →

H3K27me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.61166377Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-9BD92CB5E3514C94BB4CFEF4

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27me3

Full results →

H3K27me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

HyenaDNA large0.7901357F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-4706DF3B25387D660D099736

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27me3

Full results →

H3K27me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.79386666Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-4BCFA3A979BA0B3DE127CA36

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K36me3

Full results →

H3K36me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.64115398Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2015ADCF8106A0CA5D3FB02F

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K36me3

Full results →

H3K36me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

DNABERT-20.81427393F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-655CFC852FBC523FE6679836

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K36me3

Full results →

H3K36me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

DNABERT-20.81513333Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-362DD1F523035A965B561894

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27ac

Full results →

H3K27ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.51688786Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B3753C66C1F869AD9A2EAF83

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27ac

Full results →

H3K27ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.75582265F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-EFB220B97C8280D9491B6610

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K27ac

Full results →

H3K27ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.75668316Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-0D289404520F1A5DA916DA3A

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me3

Full results →

H3K4me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

DNABERT-20.6462249Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-F7077FC21CAD95CCABD06847

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me3

Full results →

H3K4me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

DNABERT-20.82239826F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-EDE6C8ED1118FC15BFF6F3AB

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me3

Full results →

H3K4me3 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

DNABERT-20.82255152Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-93AD51D79B721003EBFF577E

Histone-mark prediction · B02-TR06 · official_board_snapshot

H4K20me1

Full results →

H4K20me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-1000g0.65880586Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-063C04D9E67C82EFC10BFF57

Histone-mark prediction · B02-TR06 · official_board_snapshot

H4K20me1

Full results →

H4K20me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.821574F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-63132205F980DB496CF0204C

Histone-mark prediction · B02-TR06 · official_board_snapshot

H4K20me1

Full results →

H4K20me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.82328039Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-DB024FAB67ECC33F5EC973D5

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers_types

Full results →

enhancers_types · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.56944873Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-CECB679E5E86BC9E1D26F49F

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers_types

Full results →

enhancers_types · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.59959463F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-6D69B14AF0D8F60F6210A62F

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers_types

Full results →

enhancers_types · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.76736665Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-CA22DF05970787742EFA2CB9

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_all

Full results →

promoter_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.78026282Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A04CB1A867684D035353A456

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_all

Full results →

promoter_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.88986722F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-BC570173D9A099136DD82020

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_all

Full results →

promoter_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 16 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.88989899Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-E1941174941E686DC0E0DB06

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me1

Full results →

H3K4me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.49910394Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-E35D706964289F87524AD4ED

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me1

Full results →

H3K4me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.74342303F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A83ADF51140572637FE389FA

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K4me1

Full results →

H3K4me1 · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.74563333Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-84F6EE14DC6A27FD382FEB4B

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers

Full results →

enhancers · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.6135383Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A7BEACB6F85E9279AE677E21

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers

Full results →

enhancers · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.80415095F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A82F4FA7830DCA36BC1D4F2D

Enhancer recognition · B02-TR03 · official_board_snapshot

enhancers

Full results →

enhancers · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.80446665Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-AD8E90BC20B9A74188741728

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9ac

Full results →

H3K9ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.59912312Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-70FDB7557538A2AEC9DD8FFE

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9ac

Full results →

H3K9ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.7974625F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-8ECF185FF644A6415A49AF71

Histone-mark prediction · B02-TR06 · official_board_snapshot

H3K9ac

Full results →

H3K9ac · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

Enformer0.79800799Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2109ECADF8A47EE3B5667FFF

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_all

Full results →

splice_sites_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.96622943Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-C5B2FBB3B3496B5C94188781

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_all

Full results →

splice_sites_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.9776341F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-54E97A34D05FF9752D8891C6

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_all

Full results →

splice_sites_all · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.97746665Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-166971A325F40E432223DB04

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_no_tata

Full results →

promoter_no_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.78439378Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-C28E6F0AE0937C9F423D0CE2

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_no_tata

Full results →

promoter_no_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.89062629F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B6E39498713B40D53140F52D

Promoter recognition · B02-TR02 · official_board_snapshot

promoter_no_tata

Full results →

promoter_no_tata · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-V20.89081635Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-A496CF2B2AFB615BDDA83869

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_acceptors

Full results →

splice_sites_acceptors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.95897929Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B2BE0F075E53496E0E81B6FE

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_acceptors

Full results →

splice_sites_acceptors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.97945732F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-626DAC9F1D4DFB1B03058776

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_acceptors

Full results →

splice_sites_acceptors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.97946666Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-C47D6F85BF1CD91BB2C2A461

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_donors

Full results →

splice_sites_donors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.97137965Matthews correlation coefficient · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-114E78AA213321F4B8BF60B5

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_donors

Full results →

splice_sites_donors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.98566229F1 · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-327E5EB28232CEEB67AC4B30

Splice-site prediction · B02-TR01 · official_board_snapshot

splice_sites_donors

Full results →

splice_sites_donors · official tenfold cross-validation test folds · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 15 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

NT-2500M-multi0.98566666Accuracy · fractionEvidence ↗

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-320CB6D6866E900630331C60

Histone-mark prediction · B02-TR06 · same_source_table

H4K20me1

Full results →

H4K20me1 · official CSV row with 13 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-57AB4C6A2569BC0071065A96

Histone-mark prediction · B02-TR06 · same_source_table

H4K20me1

Full results →

H4K20me1 · official CSV row with 13 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2676B3CDF167BBE1A3AE2AC7

Histone-mark prediction · B02-TR06 · same_source_table

H4K20me1

Full results →

H4K20me1 · official CSV row with 13 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-3159B9C6005266A5CEAC4F14

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 14 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-15360A74BFAFD9E78BD15F37

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 14 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-D8C82CF5D3A4B5984D564BD8

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 14 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-56BF27BDA6673A6B94227DD8

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 9 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-F7F41D18FF75674CC7E1907E

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 9 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-34A991C04ED910209A6D9C7E

Histone-mark prediction · B02-TR06 · same_source_table

H3K9me3

Full results →

H3K9me3 · official CSV row with 9 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-70D110FB84425A41195CDB3B

Enhancer recognition · B02-TR03 · same_source_table

enhancers

Full results →

enhancers · official CSV row with 12 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Matthews correlation coefficientclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-0F05E8D8CE36ADB562DB8641

Enhancer recognition · B02-TR03 · same_source_table

enhancers

Full results →

enhancers · official CSV row with 12 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

F1macro-averaged classification F1 · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B46666FB9895ECF9D064D127

Enhancer recognition · B02-TR03 · same_source_table

enhancers

Full results →

enhancers · official CSV row with 12 reported fold values; isolated from tenfold board · official Nucleotide Transformer downstream benchmark evaluation

Accuracyclassification · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-42E66B82FB2710DA8D311A64