D3 · 功能、表达与分子表型

序列到基因表达预测

Predict expression from cis-regulatory DNA context.

Sequence-to-gene-expression prediction

T26DNAregression

任务定义

输入粒度
long locus sequence
生物学目标
gene expression
输出表示
continuous expression
ML formulation
regression
计数说明
NR

Benchmark coverage

2 个 benchmark 覆盖该任务

B03有公开数值结果

BEND

Human-genome tasks with biologically aligned splits; inspect each track for leakage controls.

7 个 benchmark 数值协议 · 105 条 benchmark 全局结果(非 task 小计)
B07有公开数值结果

DNALongBench

Long-range genomic tasks; exact sequence length and cell-type packaging vary by track.

2 个 benchmark 数值协议 · 6 条 benchmark 全局结果(非 task 小计)

评测协议

1 个口径单元

ProtocolTrackSplit / subset可比状态
P-B07-TISP-TABLE6DNALongBench — Sequence-to-gene-expression prediction
B07-TR04
held-out chromosomes 8 and 9
transcription initiation signal prediction; average across five assays
same_table_comparable
cross-work compute/hardware equivalence