BEND
Human-genome tasks with biologically aligned splits; inspect each track for leakage controls.
7 benchmark-wide protocols · 105 benchmark-wide rows (not a task subtotal)D3 · Function, expression & molecular phenotype
Sequence-to-gene-expression prediction
Predict expression from cis-regulatory DNA context.
Task definition
- Input granularity
- long locus sequence
- Biological target
- gene expression
- Output representation
- continuous expression
- ML formulation
- regression
- Counting notes
- NR
Benchmark coverage
2 benchmarks cover this task
DNALongBench
Long-range genomic tasks; exact sequence length and cell-type packaging vary by track.
2 benchmark-wide protocols · 6 benchmark-wide rows (not a task subtotal)Evaluation protocols
1 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
P-B07-TISP-TABLE6 | DNALongBench — Sequence-to-gene-expression prediction B07-TR04 | held-out chromosomes 8 and 9 transcription initiation signal prediction; average across five assays | same_table_comparable cross-work compute/hardware equivalence |