BEND
Human-genome tasks with biologically aligned splits; inspect each track for leakage controls.
7 个 benchmark 数值协议 · 105 条 benchmark 全局结果（非 task 小计）D1 · 序列理解与调控
剪接位点识别
Predict splice donor and acceptor positions.
Splice-site prediction
任务定义
- 输入粒度
- long sequence/base
- 生物学目标
- donor/acceptor sites
- 输出表示
- per-base class probabilities
- ML formulation
- segmentation
- 计数说明
- NR
Benchmark coverage
8 个 benchmark 覆盖该任务
GenBench
Framework and dataset suite; native task count follows current release documentation.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）Benchmarking DNA foundation models for genomic and genetic tasks
One-time benchmark study rather than a maintained benchmark suite.
6 个 benchmark 数值协议 · 8 条 benchmark 全局结果（非 task 小计）BEACON
Thirteen native tasks; some reuse OpenVaccine, Optimus and CRISPR datasets.
13 个 benchmark 数值协议 · 221 条 benchmark 全局结果（非 task 小计）Benchmarking pre-trained gLMs for RNA sequence applications
Four native study processes; the GTEx tissue-specific splicing evaluation is additionally mapped to the alternative-splicing task family without changing the native-task count.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）OmniGenBench
Meta-suite packaging RGB, BEACON, GUE, Genomic Benchmarks and PGB; native_task_count=5 suites, not the sum of their downstream tasks.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）ERNIE-RNA downstream evaluation study
One-time model study spanning 15 named data packages; PrismNet is additionally stratified into 17 HeLa RBP assays.
12 个 benchmark 数值协议 · 231 条 benchmark 全局结果（非 task 小计）Nucleotide Transformer benchmark
Eighteen downstream tasks are benchmark instances, not eighteen unique task families.
67 个 benchmark 数值协议 · 821 条 benchmark 全局结果（非 task 小计）评测协议
18 个口径单元
| Protocol | Track | Split / subset | 可比状态 |
|---|---|---|---|
PROT-B09-SPL-OFFICIAL-TRAIN-VALIDATION-TEST-SPLIT-SPL-1E33A2FA | SPL B09-TR04 | official train/validation/test split SPL | same_table_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-DONOR-HUMAN-ACCURACY-8B32E325 | Splicing Site NR | Donor_human Accuracy | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-DONOR-ARA-ACCURACY-6D33607C | Splicing Site NR | Donor_ara Accuracy | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-DONOR-RICE-ACCURACY-70CE499C | Splicing Site NR | Donor_rice Accuracy | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-ACCEPTOR-HUMAN-ACCURACY-74CC9BB8 | Splicing Site NR | Acceptor_human Accuracy | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-ACCEPTOR-ARA-ACCURACY-3E29C2A1 | Splicing Site NR | Acceptor_ara Accuracy | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SPLICING-SITE-ACCEPTOR-RICE-ACCURACY-6E46F01E | Splicing Site NR | Acceptor_rice Accuracy | official_board_comparable external_data_policy;inference_budget |
P-B08-SPLICE-DONOR | Benchmarking DNA foundation models for genomic and genetic tasks — Splice-site prediction B08-TR04 | paper-defined held-out test split splice donor identification | same_table_comparable cross-work compute/hardware equivalence |
P-B08-SPLICE-ACCEPTOR | Benchmarking DNA foundation models for genomic and genetic tasks — Splice-site prediction B08-TR04 | paper-defined held-out test split splice acceptor identification | same_table_comparable cross-work compute/hardware equivalence |
PROT-B02-NT-HF-BB57C4E1F7BBB374 | splice_sites_all B02-TR01 | official tenfold cross-validation test folds splice_sites_all | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-901698F283EB4B59 | splice_sites_all B02-TR01 | official tenfold cross-validation test folds splice_sites_all | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-E236852A1DAC5F27 | splice_sites_all B02-TR01 | official tenfold cross-validation test folds splice_sites_all | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-8AD4FBFBA5A0CE1F | splice_sites_acceptors B02-TR01 | official tenfold cross-validation test folds splice_sites_acceptors | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-B3C58F8117ED8865 | splice_sites_acceptors B02-TR01 | official tenfold cross-validation test folds splice_sites_acceptors | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-2355B1D9018EF94B | splice_sites_acceptors B02-TR01 | official tenfold cross-validation test folds splice_sites_acceptors | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-1DEE6FF253392D3A | splice_sites_donors B02-TR01 | official tenfold cross-validation test folds splice_sites_donors | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-DCA2FDDAC160D004 | splice_sites_donors B02-TR01 | official tenfold cross-validation test folds splice_sites_donors | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-F34E5925B01C43FF | splice_sites_donors B02-TR01 | official tenfold cross-validation test folds splice_sites_donors | official_board_comparable external_data_policy;inference_budget |