RNA–RNA 相互作用预测

Predict intermolecular RNA pairing or interaction.

RNA–RNA interaction prediction

任务定义

输入粒度: two sequences
生物学目标: hybridization/interaction
输出表示: pairing or interaction score
ML formulation: structured prediction/classification
计数说明: NR

Benchmark coverage

1 个 benchmark 覆盖该任务

B40有公开数值结果

RNA–RNA Interactions Benchmark

Manually confirmed interaction regions across archaea, bacteria and eukaryotes; the repository moved from UCanCompBio to Gardner-BinfLab.

7 个 benchmark 数值协议 · 84 条 benchmark 全局结果（非 task 小计）

评测协议

7 个口径单元

Protocol	Track	Split / subset	可比状态
`PROT-B40-DIRECT-INTERACTION-REGION-PREDICTIO-B4E28160-39378203`	direct interaction-region prediction B40-TR01	selected files (n=50) runtime on selected files (n=50)	same_table_comparable external_data_policy;inference_budget
`PROT-B40-DIRECT-INTERACTION-REGION-PREDICTIO-F1B74152-6E02D1B6`	direct interaction-region prediction B40-TR01	selected files (n=50) sensitivity	same_table_comparable external_data_policy;inference_budget
`PROT-B40-DIRECT-INTERACTION-REGION-PREDICTIO-A4BB7852-0FA5E783`	direct interaction-region prediction B40-TR01	selected files (n=50) precision	same_table_comparable external_data_policy;inference_budget
`PROT-B40-DIRECT-INTERACTION-REGION-PREDICTIO-55F0ED21-9AAF9408`	direct interaction-region prediction B40-TR01	selected files (n=50) MCC	same_table_comparable external_data_policy;inference_budget
`PROT-B40-NATIVE-INTERACTION-RANKING-60-INTER-1F729603-D33EF50E`	native-interaction ranking B40-TR01	60 interactions Total # of significant (P < 0.05) correct predictions for Gumbel dist. (n = 60)	same_table_comparable external_data_policy;inference_budget
`PROT-B40-NATIVE-INTERACTION-RANKING-60-INTER-836FCA3E-7B1CA897`	native-interaction ranking B40-TR01	60 interactions Total # of significant (P < 0.05) correct predictions for normal dist. (n = 60)	same_table_comparable external_data_policy;inference_budget
`PROT-B40-NATIVE-INTERACTION-RANKING-60-INTER-EAEA3385-5939C767`	native-interaction ranking B40-TR01	60 interactions Median rank of native interactions	same_table_comparable external_data_policy;inference_budget