Tier A · benchmark_suite

Numeric results available

Stanford RNA 3D Folding Challenge

Two time-separated competitions with hidden targets; submissions provide five candidate 3D structures and are evaluated best-of-five.

B35community_protocolnot_applicable

Result coverage

82 result rows across 22 protocols

Primary sources
primary_sources_screened
Related works
priority_search_complete_with_logged_api_limits
Authority readiness
verified_for_internal_use
Literature cutoff
2026-08-06
TrackNumeric coverageEvidence closureBlocker
B35-TR01
Stanford RNA 3D Folding Challenge — RNA 3D coordinate prediction
numeric_results_available
82 results
closed_with_numeric_evidenceNR
B35-TR02
Stanford RNA 3D Folding Challenge — RNA 3D model quality assessment
numeric_results_available
0 results
closed_no_eligible_public_numeric_resultrelated_work_or_configuration_fields_incomplete
B35-TR03
Stanford RNA 3D Folding Challenge — All-atom nucleic-acid complex structure prediction
numeric_results_available
0 results
closed_no_eligible_public_numeric_resultrelated_work_or_configuration_fields_incomplete

Protocol-level results

Choose the evaluation unit before comparing scores.

Each card keeps the four claim types inside one protocol + metric fingerprint.

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · RNA-Puzzles subset (n=10) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-AADF4886020EA38A2BFE13BA

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · all final Private leaderboard targets (n=20) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-BF91C25523187FEA4272D8A2

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · RNA-Puzzles subset (n=10) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-AEE890FEA6FB338E0F44E3D0

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · future PDB subset (n=10) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-58A673EE7B1BA6519FD048FF

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · all final Private leaderboard targets (n=20) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

trRosettaRNA server0.438TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-8D583C4916550027AC05BC9B

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · RNA-Puzzles subset (n=10) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

trRosettaRNA server0.34TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-AF622ED8FF6F1AC42EBD4329

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · future PDB subset (n=10) · published baseline on final Private leaderboard

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

trRosettaRNA server0.535TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-116295414114989B2B236625

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · all final Private leaderboard targets (n=20) · paper-reported oracle aggregate (Baseline)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-6C6933915C3ACFB4CA4E66A9

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · RNA-Puzzles subset (n=10) · paper-reported oracle aggregate (Baseline)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-5A4E681DBD569E50E2154089

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Baseline · future PDB subset (n=10) · paper-reported oracle aggregate (Baseline)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-FFB2DE1D0E1B0C4006DBD52C

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · all final Private leaderboard targets (n=20) · blind final Private leaderboard

TM-alignmean structure similarity · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

john0.578TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-4DF179424869D88EEC45454A

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · RNA-Puzzles subset (n=10) · blind final Private leaderboard

TM-alignmean structure similarity · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

john0.491TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-BC0E641FB5BBE10CEA4A835A

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · future PDB subset (n=10) · blind final Private leaderboard

TM-alignmean structure similarity · 14 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

odat0.706TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-99639AA94D8949A2598851B0

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · all final Private leaderboard targets (n=20) · paper-reported oracle aggregate (Kaggle)

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

Best blind algorithm0.687TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-6361CDC267CF6F98E66F75C8

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · RNA-Puzzles subset (n=10) · paper-reported oracle aggregate (Kaggle)

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

Best blind algorithm0.614TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-CB1A613CC72B389CB26C97E0

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Kaggle · future PDB subset (n=10) · paper-reported oracle aggregate (Kaggle)

TM-alignmean structure similarity · 2 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

Best Kaggle;Best blind algorithm0.76 / 0.76TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-57F623F1652F05F5EBB286A1

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · all final Private leaderboard targets (n=20) · retrospective post-competition evaluation

TM-alignmean structure similarity · 6 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

RNAPro0.648TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-07A76B1AEE4625EA7AB81E74

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · RNA-Puzzles subset (n=10) · retrospective post-competition evaluation

TM-alignmean structure similarity · 6 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

RNAPro-EBA0.551TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-B440B9B002FDD6E8C07A36FD

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · future PDB subset (n=10) · retrospective post-competition evaluation

TM-alignmean structure similarity · 6 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

RNAPro (best public)0.757TM-align · fractionEvidence ↗

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-F85EE2AB16DDC389C4D47B62

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · all final Private leaderboard targets (n=20) · paper-reported oracle aggregate (Post-competition)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-2BB3430EA302FCBD47B5E99E

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · RNA-Puzzles subset (n=10) · paper-reported oracle aggregate (Post-competition)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-083DAEE6DE6727D4C4B3DAE6

RNA 3D coordinate prediction · B35-TR01 · same_source_table

Stanford RNA 3D final Private leaderboard

Full results →

Post-competition · future PDB subset (n=10) · paper-reported oracle aggregate (Post-competition)

TM-alignmean structure similarity · 1 results

Official baseline

No eligible claimNo qualifying result exists in this snapshot.

Original-table best

No eligible claimNo qualifying result exists in this snapshot.

Official board / challenge leader

No eligible claimNo qualifying result exists in this snapshot.

Strict cross-work SOTA

No eligible claimAn original-table best is never substituted for cross-work SOTA.

Fingerprint: PMF-v1-63E8E16AABEAA605BCB7704F