RNA-Puzzles
Blind, rolling CASP-like assessment; puzzle count and target composition change by round.
50 benchmark-wide protocols · 5,657 benchmark-wide rows (not a task subtotal)D2 · Structure & conformation
All-atom nucleic-acid complex structure prediction
Predict complexes containing DNA/RNA and proteins, ligands or other nucleic acids.
Task definition
- Input granularity
- sequences plus optional templates/ligands
- Biological target
- multicomponent complex
- Output representation
- all-atom coordinates
- ML formulation
- structure prediction
- Counting notes
- NR
Benchmark coverage
4 benchmarks cover this task
CASP15 RNA
First dedicated CASP RNA season; preserve target/category filters.
9 benchmark-wide protocols · 312 benchmark-wide rows (not a task subtotal)CASP16 RNA/DNA
Includes RNA and nucleic-acid-containing targets; 42-target figure is reported for the richer RNA set in later assessment work.
2 benchmark-wide protocols · 258 benchmark-wide rows (not a task subtotal)Stanford RNA 3D Folding Challenge
Two time-separated competitions with hidden targets; submissions provide five candidate 3D structures and are evaluated best-of-five.
22 benchmark-wide protocols · 82 benchmark-wide rows (not a task subtotal)Evaluation protocols
2 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
PROT-B14-CASP15-CONTACT-FOLDING-PATTERN-ASSE-6B80E5D3-03529EDD | CASP15 contact/folding-pattern assessment B14-TR03 | target RT1189 RT1189 (native folding pattern: BRGRGB) | same_table_comparable inference_budget |
PROT-B14-CASP15-CONTACT-FOLDING-PATTERN-ASSE-EA69B929-47CA2774 | CASP15 contact/folding-pattern assessment B14-TR03 | target RT1190 RT1190 (native folding pattern: B-R-RB) | same_table_comparable inference_budget |