Genome Understanding Evaluation (GUE)
28 datasets/tasks in the native packaging; mapped here to five task families.
1 个 benchmark 数值协议 · 10 条 benchmark 全局结果（非 task 小计）D1 · 序列理解与调控
增强子识别
Recognize enhancer sequence windows independent of quantitative activity.
Enhancer recognition
任务定义
- 输入粒度
- sequence/window
- 生物学目标
- enhancer presence
- 输出表示
- binary label
- ML formulation
- classification
- 计数说明
- NR
Benchmark coverage
5 个 benchmark 覆盖该任务
Nucleotide Transformer benchmark
Eighteen downstream tasks are benchmark instances, not eighteen unique task families.
67 个 benchmark 数值协议 · 821 条 benchmark 全局结果（非 task 小计）GenBench
Framework and dataset suite; native task count follows current release documentation.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）Genomic Benchmarks
Widely reused classification datasets; simple random-style splits can inflate biological generalization.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）OmniGenBench
Meta-suite packaging RGB, BEACON, GUE, Genomic Benchmarks and PGB; native_task_count=5 suites, not the sum of their downstream tasks.
0 个 benchmark 数值协议 · 0 条 benchmark 全局结果（非 task 小计）评测协议
10 个口径单元
| Protocol | Track | Split / subset | 可比状态 |
|---|---|---|---|
PROT-B03-ENHANCER-ANNOTATION-OFFICIAL-10-FOL-A1F324B3-A796D75D | enhancer_annotation NR | official 10-fold cross-validation enhancer annotation | same_table_comparable inference_budget |
PROT-B02-NT-HF-38A9E295D4E2564E | enhancers_types B02-TR03 | official tenfold cross-validation test folds enhancers_types | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-0D0BEF08F4BE0015 | enhancers_types B02-TR03 | official tenfold cross-validation test folds enhancers_types | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-6E474B8760917E0C | enhancers_types B02-TR03 | official tenfold cross-validation test folds enhancers_types | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-42A0F677CDC6800D | enhancers B02-TR03 | official tenfold cross-validation test folds enhancers | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-93D7D965ACDC7DCE | enhancers B02-TR03 | official tenfold cross-validation test folds enhancers | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-9B10421717B4FB63 | enhancers B02-TR03 | official tenfold cross-validation test folds enhancers | official_board_comparable external_data_policy;inference_budget |
PROT-B02-NT-HF-780CC1E9BC843A99 | enhancers B02-TR03 | official CSV row with 12 reported fold values; isolated from tenfold board enhancers | insufficient_protocol_detail nonstandard fold-array length;external_data_policy;inference_budget |
PROT-B02-NT-HF-9BFF5ECC83FBBF0F | enhancers B02-TR03 | official CSV row with 12 reported fold values; isolated from tenfold board enhancers | insufficient_protocol_detail nonstandard fold-array length;external_data_policy;inference_budget |
PROT-B02-NT-HF-F71C2E05E5F88948 | enhancers B02-TR03 | official CSV row with 12 reported fold values; isolated from tenfold board enhancers | insufficient_protocol_detail nonstandard fold-array length;external_data_policy;inference_budget |