Tier C · benchmark_suite
Numeric results availableRNA–RNA Interactions Benchmark
Manually confirmed interaction regions across archaea, bacteria and eukaryotes; the repository moved from UCanCompBio to Gardner-BinfLab.
B40community_protocolnot_applicable
Result coverage
84 result rows across 7 protocols
- Primary sources
- primary_displayed_tables_complete
- Related works
- index_screen_complete_with_logged_api_limits
- Authority readiness
- usable_with_caveats
- Literature cutoff
- 2026-08-06
| Track | Numeric coverage | Evidence closure | Blocker |
|---|
B40-TR01
RNA–RNA Interactions Benchmark — RNA–RNA interaction prediction | numeric_results_available
84 results | closed_with_numeric_evidence | NR |
Protocol-level results
Choose the evaluation unit before comparing scores.
Each card keeps the four claim types inside one protocol + metric fingerprint.
runtime on selected files (n=50) · selected files (n=50) · task-specific evaluation
Runtimewall-clock on selected files · 15 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RIsearch4.16Runtime · secondsEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-3CA7F24A71A95C6F139F77C1
sensitivity · selected files (n=50) · task-specific evaluation
True positive ratesensitivity · 15 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAduplex0.66True positive rate · fractionEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-B5F8BC535D9CB46532469147
precision · selected files (n=50) · task-specific evaluation
Positive predictive valueprecision · 15 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAup0.69Positive predictive value · fractionEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-62599CABF6ECB49ABC377E6F
MCC · selected files (n=50) · task-specific evaluation
Matthews correlation coefficientclassification · 15 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAup0.6Matthews correlation coefficient · fractionEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-456AB72A26D20E58AD5035CA
Total # of significant (P < 0.05) correct predictions for Gumbel dist. (n = 60) · 60 interactions · task-specific evaluation
Significant correct predictionsP<0.05 · 8 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAup28Significant correct predictions · countEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-C6C9BA9F98C320D270E4E2B0
Total # of significant (P < 0.05) correct predictions for normal dist. (n = 60) · 60 interactions · task-specific evaluation
Significant correct predictionsP<0.05 · 8 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAplex30Significant correct predictions · countEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-6A4FACBC9F10C9BB899419A4
Median rank of native interactions · 60 interactions · task-specific evaluation
Median native-interaction ranknative interactions · 8 results
Official baseline
No eligible claimNo qualifying result exists in this snapshot.Original-table best
RNAplex10.5Median native-interaction rank · rankEvidence ↗Official board / challenge leader
No eligible claimNo qualifying result exists in this snapshot.Strict cross-work SOTA
No eligible claimAn original-table best is never substituted for cross-work SOTA.Fingerprint: PMF-v1-FA61529DFFD39C9144628CF6