Relationship registry
How works use this benchmark
Partial claims, non-evaluation uses, and third-party summaries stay visible without entering model comparisons.
Partial evaluation claims
evaluation
explainable-protein-protein-binding-affinity-predictio-ppb-affinity-2-use
Partialsubset
Work: Explainable protein-protein binding affinity prediction via fine-tuning protein language models · source version explainable-protein-protein-binding-affinity-predictio-biorxiv-version-posted-2
- Selection
- formal subset · Random five-fold cross-validation with 80% training and 20% testing per fold
- Metrics
- RMSE
- Linked runs
- None
Not reported / unresolved: Benchmark version is not reported.; The exact realized random-split test n is not reported; only approximately 2,404 per fold is stated.; Model providers and versions are not explicitly reported.; benchmark version; realized n/scope
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- table: Table S2
Supports: /relation_type - table: Table S1
Supports: /benchmark_id - section: 4.2
Supports: /scope - section: 4.2
Supports: /scope - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /metric_labels
evaluation
explainable-protein-protein-binding-affinity-predictio-ppb-affinity-3-use
Partialsubset
Work: Explainable protein-protein binding affinity prediction via fine-tuning protein language models · source version explainable-protein-protein-binding-affinity-predictio-biorxiv-version-posted-2
- Selection
- formal subset · GroupKFold cold split grouping interactions by PDB ID
- Metrics
- RMSE
- Linked runs
- None
Not reported / unresolved: Benchmark version and exact realized test n are not reported.; Model providers and versions are not explicitly reported.; benchmark version; realized n/scope
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- table: Table S2
Supports: /relation_type - section: 2.2
Supports: /benchmark_id - section: 4.2
Supports: /scope - section: 4.2
Supports: /scope - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /metric_labels
evaluation
explainable-protein-protein-binding-affinity-predictio-ppb-affinity-4-use
Partialsubset
Work: Explainable protein-protein binding affinity prediction via fine-tuning protein language models · source version explainable-protein-protein-binding-affinity-predictio-biorxiv-version-posted-2
- Selection
- formal subset · K-mer Jaccard clustering with K=3, 30% similarity threshold, and pair exclusion
- Metrics
- RMSE
- Linked runs
- None
Not reported / unresolved: Benchmark version and exact realized test n are not reported.; Model providers and versions are not explicitly reported.; benchmark version; realized n/scope
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- table: Table S2
Supports: /relation_type - section: 2.1
Supports: /benchmark_id - section: 4.2
Supports: /scope - section: 4.2
Supports: /scope - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /model_ids - table: Table S2
Supports: /metric_labels
evaluation
ppb-affinity-protein-protein-binding-affinity-dataset-ppb-affinity-2-use
Partialunknown
Work: PPB-Affinity: Protein-Protein Binding Affinity dataset for AI-based protein drug discovery · source version ppb-affinity-protein-protein-binding-affinity-dataset-2024-12-03
- Selection
- not reported
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: The testing-subset size and selection procedure are not printed in the available text.; Repeats, seed, train-validation-test partition sizes, and model version are not reported in the available text.; Linked Figures 4–5 are unavailable locally, so additional labeled subgroup and source-partition results could not be inspected.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Technical Validation > Whole dataset, paragraph 47
Supports: /relation_type - section: Abstract, paragraph 1
Supports: /benchmark_id - section: Author contributions; Technical Validation > A benchmark affinity prediction, paragraph 46
Supports: /model_ids
Creation, training, validation, or model-selection uses
training
explainable-protein-protein-binding-affinity-predictio-ppb-affinity-1-use
Non-evaluationunknown
Work: Explainable protein-protein binding affinity prediction via fine-tuning protein language models · source version explainable-protein-protein-binding-affinity-predictio-biorxiv-version-posted-2
- Selection
- not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: Benchmark version is not reported.; Exact per-fold training sizes are not reported for cold and sequence-similarity splits.; BALM-PPI provider and version are not explicitly reported.
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- section: 2.1
Supports: /relation_type - section: 2.1
Supports: /benchmark_id - section: 4.1 Dataset
Supports: /scope - section: 4.1 Dataset
Supports: /scope - table: Table S1
Supports: /scope - section: 4.1 Dataset
Supports: /scope - section: 2.1
Supports: /model_ids
benchmark creation
ppb-affinity-protein-protein-binding-affinity-dataset-ppb-affinity-1-use
Non-evaluationunknown
Work: PPB-Affinity: Protein-Protein Binding Affinity dataset for AI-based protein drug discovery · source version ppb-affinity-protein-protein-binding-affinity-dataset-2024-12-03
- Selection
- not applicable
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: No formal PPB-Affinity version label is printed.; The exact dataset release date is not printed; the data citation reports only 2024.; The licenses of the two GitHub repositories are not printed.; Figure 3 raster content is unavailable locally, preventing inspection of any additional labeled partition values.
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- section: Background & Summary, paragraph 4
Supports: /relation_type - section: Background & Summary, paragraph 4
Supports: /benchmark_id
training
ppb-affinity-protein-protein-binding-affinity-dataset-ppb-affinity-3-use
Non-evaluationunknown
Work: PPB-Affinity: Protein-Protein Binding Affinity dataset for AI-based protein drug discovery · source version ppb-affinity-protein-protein-binding-affinity-dataset-2024-12-03
- Selection
- not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: The training percentages shown in Figure 5F cannot be inspected because the linked raster is unavailable locally.; Training sample counts, split procedure, repeats, seed, hyperparameters, and model version are not reported in the available text.
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- section: Technical Validation > Source datasets, paragraph 50
Supports: /relation_type - section: Abstract, paragraph 1; Technical Validation > Source datasets, paragraph 50
Supports: /benchmark_id - section: Technical Validation > Source datasets, paragraph 50
Supports: /scope - section: Author contributions; Technical Validation > A benchmark affinity prediction, paragraph 46; Source datasets, paragraph 50
Supports: /model_ids
Evaluation registry
Works and run settings
A setting change—scope, prompt, tools, budget, grader, or repeats—creates a separate run. Charts never cross a comparability group.
No normalized evaluation run is published yet. Creator evidence is still attached below.