EternaBench
Thirty-one chemical-mapping, riboswitch and external thermodynamic datasets; repository is archived but versioned and reproducible.
8 benchmark-wide protocols · 107 benchmark-wide rows (not a task subtotal)D5 · Interaction & complexes
Aptamer–target affinity prediction
Predict aptamer binding to proteins or other targets.
Task definition
- Input granularity
- aptamer plus target
- Biological target
- binding affinity
- Output representation
- Kd/enrichment/rank
- ML formulation
- regression/ranking
- Counting notes
- NR
Benchmark coverage
2 benchmarks cover this task
AptaBench
6,289 DNA/RNA aptamer–ligand records with fixed stratified, ligand-disjoint and aptamer-disjoint five-fold protocols; anonymous pre-review status should be preserved.
0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)Evaluation protocols
3 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
PROT-B10-SYSTEMATIC-BINDING-RANKING-DASE-F1-B4592C9A | Systematic Binding Ranking NR | DAse F1 | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SYSTEMATIC-BINDING-RANKING-TARDBP-F1-84E8EA43 | Systematic Binding Ranking NR | TARDBP F1 | official_board_comparable external_data_policy;inference_budget |
PROT-B10-SYSTEMATIC-BINDING-RANKING-ISLETS-F1-E58AF200 | Systematic Binding Ranking NR | ISLETS F1 | official_board_comparable external_data_policy;inference_budget |