RNA-Scope
Board is public; DeepASmRNA and DeeReCT-PolyA/PAS are exposed as distinct tracks; verify exact release and frozen splits before comparative claims.
79 benchmark-wide protocols · 2,093 benchmark-wide rows (not a task subtotal)D4 · Variant effect & evolution
RNA DMS effect prediction
Predict mutation effects across RNA deep-mutational-scanning assays.
Task definition
- Input granularity
- mutant sequence or mutation
- Biological target
- experimental RNA fitness/function
- Output representation
- continuous assay score
- ML formulation
- regression/ranking
- Counting notes
- NR
Benchmark coverage
3 benchmarks cover this task
RNAGym
Three core tasks plus a task-family view of the ribozyme-assay subset; the subset track is separated from the aggregate DMS-effect track.
2 benchmark-wide protocols · 7 benchmark-wide rows (not a task subtotal)NABench
Large-scale nucleotide fitness benchmark; verify repository release before production adoption.
0 benchmark-wide protocols · 0 benchmark-wide rows (not a task subtotal)Evaluation protocols
2 protocol units
| Protocol | Track | Split / subset | Comparability |
|---|---|---|---|
PROT-SUPP-B11-RNAGYM-T2 | fitness overall | RNAGym original benchmark table B11-TR01 | full RNAGym fitness benchmark aggregate fitness overall across the source-defined assay collection | insufficient_protocol_detail assay-level aggregation details;external_data_policy;inference_budget |
PROT-SUPP-B11-BASEPROMPT-T2 | fitness overall | BasePrompt same-source table B11-TR01 | full RNAGym fitness benchmark aggregate fitness overall across the source-defined assay collection | insufficient_protocol_detail assay-level aggregation details;external_data_policy;inference_budget |