B08-TR05 · same_source_table
Benchmarking DNA foundation models for genomic and genetic tasks — Regulatory variant-effect prediction
putative causal ipaQTL
Protocol fingerprint
PF-v1-F0F1D6FA6930282BBB431EE3
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- Split
- nested chromosome-based held-out test groups
- Aggregation
- average held-out AUROC
- External data
- model-specific pretraining allowed
- Ensemble / best-of-N
- single reported configuration · 1
- Critical unknowns
- cross-work compute/hardware equivalence
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Complete protocol fields
- canonical dataset ids
- NR
- data version
- publication release 2025
- label visibility
- test labels available only to evaluator/reporting authors
- input modality
- reference/alternate sequence
- preprocessing
- reference/alternate embeddings and paper-defined classifier
- model selection rule
- paper-defined downstream model
- inference budget
- single model
- protocol completeness
- complete_for_same_table_comparison