Atlas/Models/bioinstruction-biomedgpt-lm-7b

Exact model identity

BioMedGPT-LM-7B (Biology-Instructions label)

BioMedGPT creators · version status: reported

Similar model names are never merged automatically. Evaluation membership and numeric result rows only reference the exact ID bioinstruction-biomedgpt-lm-7b.

Evaluation settings

Benchmark	Work	Run / group	Scope
Biology-Instructions Antibody-Antigen Neutralization	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-aan-open-baselines bioinstruction-aan-open-baselines-emnlp-2025	subset · n=3301
Biology-Instructions APA Isoform Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-apa-open-baselines bioinstruction-apa-open-baselines-emnlp-2025	subset · n=49755
Biology-Instructions CRISPR On-Target Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-crispr-on-target-open-baselines bioinstruction-crispr-on-target-open-baselines-emnlp-2025	subset · n=416
Biology-Instructions Enzyme Commission Number Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-ec-open-baselines bioinstruction-ec-open-baselines-emnlp-2025	subset · n=1919
Biology-Instructions Enhancer-Promoter Interaction Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-epi-open-baselines bioinstruction-epi-open-baselines-emnlp-2025	subset · n=308
Biology-Instructions Protein Fluorescence Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-fluorescence-open-baselines bioinstruction-fluorescence-open-baselines-emnlp-2025	subset · n=27217
Biology-Instructions RNA Modification Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-modification-open-baselines bioinstruction-modification-open-baselines-emnlp-2025	subset · n=1200
Biology-Instructions Mean Ribosome Loading Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-mrl-open-baselines bioinstruction-mrl-open-baselines-emnlp-2025	subset · n=7600
Biology-Instructions Non-coding RNA Function Classification	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-ncrna-open-baselines bioinstruction-ncrna-open-baselines-emnlp-2025	subset · n=4840
Biology-Instructions Programmable RNA Switches	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-prs-open-baselines bioinstruction-prs-open-baselines-emnlp-2025	subset · n=11019
Biology-Instructions RNA-Protein Interaction Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-rpi-open-baselines bioinstruction-rpi-open-baselines-emnlp-2025	subset · n=4164
Biology-Instructions siRNA Efficiency Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-sirna-open-baselines bioinstruction-sirna-open-baselines-emnlp-2025	subset · n=6688
Biology-Instructions Protein Solubility Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-solubility-open-baselines bioinstruction-solubility-open-baselines-emnlp-2025	subset · n=2001
Biology-Instructions Protein Stability Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-stability-open-baselines bioinstruction-stability-open-baselines-emnlp-2025	subset · n=12851
Biology-Instructions Protein Thermostability Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-thermostability-open-baselines bioinstruction-thermostability-open-baselines-emnlp-2025	subset · n=1336

Numeric results

Benchmark	Work	Run / group	Metric	Value
Biology-Instructions Antibody-Antigen Neutralization	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-aan-open-baselines bioinstruction-aan-open-baselines-emnlp-2025	MCC	0.92 percent
Biology-Instructions APA Isoform Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-apa-open-baselines bioinstruction-apa-open-baselines-emnlp-2025	R2	0 percent
Biology-Instructions CRISPR On-Target Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-crispr-on-target-open-baselines bioinstruction-crispr-on-target-open-baselines-emnlp-2025	Spearman's ρ	0.12 percent
Biology-Instructions Enzyme Commission Number Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-ec-open-baselines bioinstruction-ec-open-baselines-emnlp-2025	Fmax	1.07 percent
Biology-Instructions Enhancer-Promoter Interaction Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-epi-open-baselines bioinstruction-epi-open-baselines-emnlp-2025	MCC	0 percent
Biology-Instructions Protein Fluorescence Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-fluorescence-open-baselines bioinstruction-fluorescence-open-baselines-emnlp-2025	Spearman's ρ	0.43 percent
Biology-Instructions RNA Modification Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-modification-open-baselines bioinstruction-modification-open-baselines-emnlp-2025	AUC	51.65 percent
Biology-Instructions Mean Ribosome Loading Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-mrl-open-baselines bioinstruction-mrl-open-baselines-emnlp-2025	R2	0.01 percent
Biology-Instructions Non-coding RNA Function Classification	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-ncrna-open-baselines bioinstruction-ncrna-open-baselines-emnlp-2025	Accuracy	1.62 percent
Biology-Instructions Programmable RNA Switches	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-prs-open-baselines bioinstruction-prs-open-baselines-emnlp-2025	R2	0.03 percent
Biology-Instructions RNA-Protein Interaction Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-rpi-open-baselines bioinstruction-rpi-open-baselines-emnlp-2025	MCC	-2.39 percent
Biology-Instructions siRNA Efficiency Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-sirna-open-baselines bioinstruction-sirna-open-baselines-emnlp-2025	Mixed Score	19.71 percent
Biology-Instructions Protein Solubility Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-solubility-open-baselines bioinstruction-solubility-open-baselines-emnlp-2025	Accuracy	49.78 percent
Biology-Instructions Protein Stability Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-stability-open-baselines bioinstruction-stability-open-baselines-emnlp-2025	Spearman's ρ	-0.92 percent
Biology-Instructions Protein Thermostability Prediction	Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models	bioinstruction-thermostability-open-baselines bioinstruction-thermostability-open-baselines-emnlp-2025	Spearman's ρ	-0.72 percent