Relationship registry
How works use this benchmark
Partial claims, non-evaluation uses, and third-party summaries stay visible without entering model comparisons.
Partial evaluation claims
evaluation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-2-use
Partialunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not reported
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: The parameter matrix does not provide one uniform realized evaluation n.; Random seeds and versions of most evaluated DTU methods are not reported.; Unlabeled graphical scores were not estimated.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats; exact model
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Overall performance of DTU detection
Supports: /relation_type - page: Article title
Supports: /benchmark_id
evaluation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-3-use
Partialunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not reported
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: Simulation repeat count and random seed are not reported.; The varying balanced and unbalanced dataset sizes prevent one uniform realized n.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats; exact model
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Performance in single-cell data
Supports: /relation_type - page: Article title
Supports: /benchmark_id
evaluation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-4-use
Partialunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not reported
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: Simulation repeat count and random seed are not reported.; The unbalanced meta-cell evaluation has no single reported realized cell count.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats; exact model
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Performance in single-cell data
Supports: /relation_type - page: Article title
Supports: /benchmark_id
evaluation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-5-use
Partialunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not reported
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: The realized sample count after removing 10 matching samples is not explicitly reported.; The real dataset has no simulated ground truth.; F1 dots without printed numeric labels were not estimated.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats; exact model
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Benchmarking with a real transcriptome dataset
Supports: /relation_type - page: Article title
Supports: /benchmark_id
evaluation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-6-use
Partialunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not reported
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: The body and Figure 7 caption disagree about the evaluated method list.; No ground-truth performance metric is reported for the real time-series dataset.; Conflicted scope-n claim omitted after independent verification; the evaluation relationship is published conservatively.; Conflicted result claim omitted after independent verification; the evaluation relationship is published conservatively.; benchmark version; realized n/scope; metric; numeric result; prompt and tools; grader and repeats; exact model
Owner-reviewed conservative publication: the creator evaluation is retained only as a partial relationship; conflicted settings and outcomes are omitted pending manual reconciliation.
Evidence
- section: Time series IS analysis
Supports: /relation_type - page: Article title
Supports: /benchmark_id
Creation, training, validation, or model-selection uses
benchmark creation
comprehensive-benchmark-of-differential-transcript-usa-comprehensive-benchmark-of-differential-transcript-usage-analysis-for-bu-1-use
Non-evaluationunknown
Work: Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing · source version comprehensive-benchmark-of-differential-transcript-usa-final-published-version
- Selection
- not applicable
- Models
- Not reported / not applicable
- Metrics
- Not reported / not applicable
- Linked runs
- None
Not reported / unresolved: No single finite primary item inventory is reported for the reusable benchmark matrix.; No benchmark version or separate release date is stated.; The paper does not explicitly assign a Registry access level.
AI-assisted double-pass extraction; values are limited to independently supported claims.
Evidence
- section: Abstract
Supports: /relation_type - page: Article title
Supports: /benchmark_id
Evaluation registry
Works and run settings
A setting change—scope, prompt, tools, budget, grader, or repeats—creates a separate run. Charts never cross a comparability group.
No normalized evaluation run is published yet. Creator evidence is still attached below.